PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024963838.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 481aa    MW: 52873.8 Da    PI: 6.4271
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024963838.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3342.8e-1021004751374
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                     lv+lL+++Aea++s++++  la  +L rl++l+sp+  ++m+Rlaayft AL a l   + + +       +++++ +++laa++l++++sP++k
  XP_024963838.1 100 LVHLLMAAAEAMTSDNKShdLAAVILVRLKDLVSPTEgTNMERLAAYFTDALLALLETGGGGSSGGGGLYFKQHHHRTDVLAAFQLLQDMSPYVK 194
                     68************8877669***********9987669*****************9955554444433333445799***************** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl.v 182
                     f+h+taNqaI eav +e+rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT++++p sg  s  +++etg+rL+ fA+++g pf+f+   v
  XP_024963838.1 195 FGHFTANQAIIEAVTHERRVHIVDYDIMEGIQWASLMQALISRKDGPPtlHLRITALSRPGSGrrSISTVQETGRRLTAFATSIGQPFSFHQCkV 289
                     ********************************************9999999*********99999999***********************9977 PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +   ++++++L++ +gEa+++n++l+l +   +s ++     ++L+  k+l+Pk+v++ve+e  + ++ F+ rf+++l++ysal+dslea++p 
  XP_024963838.1 290 LDPDGTFKPSALKLVRGEAIVINCALHLPHSSYRSPTSVA---SFLSGSKTLNPKLVTLVEEEGPRVEGGFVGRFMDTLHHYSALYDSLEAGFPM 381
                     779999********************99777655555555...7*************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvS 371
                     + ++r+ vEr++lg++i   +    +e   +h +  +W e+l+ea F+p+++s  + +qaklll  ++ dgyrvee+ s+ lvlgWk+r+L+s+S
  XP_024963838.1 382 QGRARALVERVFLGPRILGSLGRVYRE---DHGQWCSWGEWLSEANFQPINISFANHCQAKLLLGLFH-DGYRVEESaSNKLVLGWKSRRLLSAS 472
                     ******************999999887...**************************************.******876999************** PP

            GRAS 372 aWr 374
                      W+
  XP_024963838.1 473 IWT 475
                     **6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    
MAMVVDELLS ELDFSDFTTT STTNSTTTPE DDRWGDWSPA GDWDVFAVQP QENFHHIFEL  60
KMDDKTVSFS GGNQNVGSPG PLMIEPSVDG GSGDMKGLRL VHLLMAAAEA MTSDNKSHDL  120
AAVILVRLKD LVSPTEGTNM ERLAAYFTDA LLALLETGGG GSSGGGGLYF KQHHHRTDVL  180
AAFQLLQDMS PYVKFGHFTA NQAIIEAVTH ERRVHIVDYD IMEGIQWASL MQALISRKDG  240
PPTLHLRITA LSRPGSGRRS ISTVQETGRR LTAFATSIGQ PFSFHQCKVL DPDGTFKPSA  300
LKLVRGEAIV INCALHLPHS SYRSPTSVAS FLSGSKTLNP KLVTLVEEEG PRVEGGFVGR  360
FMDTLHHYSA LYDSLEAGFP MQGRARALVE RVFLGPRILG SLGRVYREDH GQWCSWGEWL  420
SEANFQPINI SFANHCQAKL LLGLFHDGYR VEESASNKLV LGWKSRRLLS ASIWTSSSHS  480
D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-157GRAS family protein