PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024963577.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 249aa    MW: 28576.2 Da    PI: 6.6048
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024963577.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.32.4e-10101133238
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgt 38 
                     +++GVr ++ +grW+A I+dp     + +r +lg++++
  XP_024963577.1 101 KFRGVRKRR-WGRWAAKIMDPA----ThQRLWLGTYDS 133
                     89****887.**********94....35********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MEVPAMSEKF SDQEESPCPR HIRISMTDPY ATDSLRDEDD DHFGRWHVKK YVNEINIQTS  60
CKTTMMLVNG KMTTTRNSPF ALESKQKALK KKRSPAGNVR KFRGVRKRRW GRWAAKIMDP  120
ATHQRLWLGT YDSAVTNFVM PTVLENPPLE NVTSISDHHP NLKSFKLPLT DAPPLDYQSF  180
DSIQLGDEVA FFNMHHDFGS IDPNQFDDFG TIPIVHNFVP DIGRGSPSTL QIDNYFEDIS  240
YSTLDSWFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189107LKKKRSPAGNVRKFRGVRK
290109KKKRSPAGNVRKFRGVRKRR
391110KKKRSPAGNVRKFRGVRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-21ERF family protein