PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961307.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 694aa MW: 82207 Da PI: 8.1436

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961307.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.5	8.7e-07	211	230	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+ +tG C++G rC++ H XP_024961307.1 211 CPFHIKTGACRFGLRCNRVH 230 ******************99 PP
2	zf-CCCH	27.9	4e-09	340	367	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G+ C+F H+ XP_024961307.1 340 WKVAICGEYMKSRlkTCSRGSACNFLHC 367 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MEGREPSAAE QPEFVSRKEK RKALKKDKRK QIRKELAEKA RAEEEARIND PEEQRRIQVE 60 EEREKERLER DRKEFEERER IFLEELQRKK MEEEEEERRN VVERELKLKQ EGVEEGSNED 120 DEWEYVEEGP PEIIWQGNEI IVKKNKVRVK KKDANQHTEK EDPNRPTSNP LPPQSEAYDA 180 YKNAPMTSVE LLDSVAQQVP NFGTEQDKSH CPFHIKTGAC RFGLRCNRVH YYPDKSSTLL 240 IKNMYNGPGL AWEQDEGLEY TEEEVEHSYE EFYEDVHTEF LKFGEIINFK VCRNGSFHLR 300 GNVYVNYKSL DSAVMAHNSV HGRYFAGKQV KCEFVSLTKW KVAICGEYMK SRLKTCSRGS 360 ACNFLHCFSN PGGDYEWADC DKPPPRYWAK KMTALFGYSD DSWHAKQKEQ PSPKDSKIFT 420 SDRDGYHSKR RRSIQTNQHD GGSGRSRHEE NHARKSRHHE QQKDDKSYED ETEYKKNHRG 480 SSIAVDTDSG GDRNTHRRHR DISENRSRHN WRDYDGRSSR THGSSSDEDL YMERRHVYKK 540 RRSRHRENIS ESSNDDGESG GAKHEPQWQP SSDPSETELQ KHKERKTNSA RYHRRSRRHD 600 DKVDHRQSQN KQKRRHRKSA SLHRYERSRS RDSGYLSDKD NDRSERWDPD GSPNEHGEHR 660 SNKVDYEKSE DRETRSGSLE EESKSRQIRD RKRI

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MEGREPSAAE QPEFVSRKEK RKALKKDKRK QIRKELAEKA RAEEEARIND PEEQRRIQVE  60
EEREKERLER DRKEFEERER IFLEELQRKK MEEEEEERRN VVERELKLKQ EGVEEGSNED  120
DEWEYVEEGP PEIIWQGNEI IVKKNKVRVK KKDANQHTEK EDPNRPTSNP LPPQSEAYDA  180
YKNAPMTSVE LLDSVAQQVP NFGTEQDKSH CPFHIKTGAC RFGLRCNRVH YYPDKSSTLL  240
IKNMYNGPGL AWEQDEGLEY TEEEVEHSYE EFYEDVHTEF LKFGEIINFK VCRNGSFHLR  300
GNVYVNYKSL DSAVMAHNSV HGRYFAGKQV KCEFVSLTKW KVAICGEYMK SRLKTCSRGS  360
ACNFLHCFSN PGGDYEWADC DKPPPRYWAK KMTALFGYSD DSWHAKQKEQ PSPKDSKIFT  420
SDRDGYHSKR RRSIQTNQHD GGSGRSRHEE NHARKSRHHE QQKDDKSYED ETEYKKNHRG  480
SSIAVDTDSG GDRNTHRRHR DISENRSRHN WRDYDGRSSR THGSSSDEDL YMERRHVYKK  540
RRSRHRENIS ESSNDDGESG GAKHEPQWQP SSDPSETELQ KHKERKTNSA RYHRRSRRHD  600
DKVDHRQSQN KQKRRHRKSA SLHRYERSRS RDSGYLSDKD NDRSERWDPD GSPNEHGEHR  660
SNKVDYEKSE DRETRSGSLE EESKSRQIRD RKRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-144	C3H family protein