PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960808.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

E2F/DP

Protein Properties

Length: 390aa MW: 43332.6 Da PI: 6.7585

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960808.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	83	2.5e-26	129	194	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++ ++gi++ln++a L +v ++RRiYDi+NVLe+++l+ek kn+irwkg XP_024960808.1 129 RYDNSLGLLTKKFVSLIQADKDGILDLNKAAVLL---EV--QKRRIYDITNVLEGIGLVEKATKNHIRWKG 194 689*****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MSMSVAVGGD DVNLSLQKAL SRMHVQHQHP HQQIGLCNPS ISNQNLPVFF NSATQTVKCE 60 DVDGASPIVH GGIKVEQVDD PSFGPLPCGV GKRNRKSKAS RSSIHSKAGN PEPNADFGDL 120 NLNLATACRY DNSLGLLTKK FVSLIQADKD GILDLNKAAV LLEVQKRRIY DITNVLEGIG 180 LVEKATKNHI RWKGNKTLSP RTVVNYSKKL KTELEHLHAE ESRIDECIRE TKERLNSVKF 240 DHNSQKYLYL TEQDFRNLPC FKNQTLIAIR APHASSIEVP DPDQDSGFSQ KQFKLIVRSH 300 TGPIDLYLVS ESEEPTNSLN ESAREGGNYV NHDTDFSPHQ QTHLDLVSSV DSGSHGIQKI 360 IPSQNDIAHD YWFGSNPEVS ATELWGMNLP

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MSMSVAVGGD DVNLSLQKAL SRMHVQHQHP HQQIGLCNPS ISNQNLPVFF NSATQTVKCE  60
DVDGASPIVH GGIKVEQVDD PSFGPLPCGV GKRNRKSKAS RSSIHSKAGN PEPNADFGDL  120
NLNLATACRY DNSLGLLTKK FVSLIQADKD GILDLNKAAV LLEVQKRRIY DITNVLEGIG  180
LVEKATKNHI RWKGNKTLSP RTVVNYSKKL KTELEHLHAE ESRIDECIRE TKERLNSVKF  240
DHNSQKYLYL TEQDFRNLPC FKNQTLIAIR APHASSIEVP DPDQDSGFSQ KQFKLIVRSH  300
TGPIDLYLVS ESEEPTNSLN ESAREGGNYV NHDTDFSPHQ QTHLDLVSSV DSGSHGIQKI  360
IPSQNDIAHD YWFGSNPEVS ATELWGMNLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47870.1	2e-82	E2F/DP family protein