PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960004.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HB-other

Protein Properties

Length: 745aa MW: 81735.3 Da PI: 4.6033

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.8	1.4e-06	13	74	6	55
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +f++ ++ e+e+ + + p +e LA+k +++ +qV +WFqNrR+ XP_024960004.1 13 RFNQAEIAEMEAILQAhkTAMPVREVLVSLAEKFsnseersgkiEVQMKQVWNWFQNRRYAI 74 58888899999998853477899999999999999999999999***************865 PP

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence
MGRPPSNGGP SFRFNQAEIA EMEAILQAHK TAMPVREVLV SLAEKFSNSE ERSGKIEVQM 60 KQVWNWFQNR RYAIRAKAAK SPGKLNVTQM TRDDSAMVKG VPQATQPHGA SSATVRSLPQ 120 APQHPTGPSG RVADNSQMEY EAKSARDGAW YDVSTFLSHR SLETGDPEVL VRFAGFGAEE 180 DEWVIVRKNV RQRSLPCESS ECVAVLPADL ILCFQEGKEQ ALYFDAHVLD AQRRRHDVRG 240 CRCRFLVRYD HDQSEEIVAL RKICRRPETD YRLQQLHAVN ESLSANQNKN GANNIHTVST 300 LRVYPPAEVQ QKQHKVEPVV PSLSAEVPQK RQKVESTFPA PPPDGSQKHF KVEPAMVALS 360 GVPQNQQRVQ PAPPPRPPSE APLYPNKVEP VLCLPSDQAL VEPHRVEPVV PCPSAQPSLE 420 PNKVESVVPV PSAQDSAETQ VAIMPTCSEK VPLELHQVQP VMHGPSTELS PTVVAPVEPK 480 VAESLKESMV SGTSVEVPSE LEPADDVSVV AQMETKIAEP QKEEPVVAVQ VPSELHEIQP 540 MLSGLSTQVS VAAPLEPKVA EPQKEELVSE VPSELHQVQP MMPGPLTEQV SIVAPKIVEP 600 QKEPMTPGDS IEVGSELHKV QPMMPVPLTQ VLLAVAPMEA NVGEPQKEEP LELRQVQPDE 660 LHTSVLEAIE TKPEESVTTV EEIETKAEEP VNSGNVIEQP KLAEVMEGNV DDEEHAKDAE 720 NGNINEVGDP ELQVENAGTV EMEEG

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence

MGRPPSNGGP SFRFNQAEIA EMEAILQAHK TAMPVREVLV SLAEKFSNSE ERSGKIEVQM  60
KQVWNWFQNR RYAIRAKAAK SPGKLNVTQM TRDDSAMVKG VPQATQPHGA SSATVRSLPQ  120
APQHPTGPSG RVADNSQMEY EAKSARDGAW YDVSTFLSHR SLETGDPEVL VRFAGFGAEE  180
DEWVIVRKNV RQRSLPCESS ECVAVLPADL ILCFQEGKEQ ALYFDAHVLD AQRRRHDVRG  240
CRCRFLVRYD HDQSEEIVAL RKICRRPETD YRLQQLHAVN ESLSANQNKN GANNIHTVST  300
LRVYPPAEVQ QKQHKVEPVV PSLSAEVPQK RQKVESTFPA PPPDGSQKHF KVEPAMVALS  360
GVPQNQQRVQ PAPPPRPPSE APLYPNKVEP VLCLPSDQAL VEPHRVEPVV PCPSAQPSLE  420
PNKVESVVPV PSAQDSAETQ VAIMPTCSEK VPLELHQVQP VMHGPSTELS PTVVAPVEPK  480
VAESLKESMV SGTSVEVPSE LEPADDVSVV AQMETKIAEP QKEEPVVAVQ VPSELHEIQP  540
MLSGLSTQVS VAAPLEPKVA EPQKEELVSE VPSELHQVQP MMPGPLTEQV SIVAPKIVEP  600
QKEPMTPGDS IEVGSELHKV QPMMPVPLTQ VLLAVAPMEA NVGEPQKEEP LELRQVQPDE  660
LHTSVLEAIE TKPEESVTTV EEIETKAEEP VNSGNVIEQP KLAEVMEGNV DDEEHAKDAE  720
NGNINEVGDP ELQVENAGTV EMEEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.1	1e-123	HB-other family protein