PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023929776.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 586aa MW: 66212.2 Da PI: 6.9972

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023929776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.6	0.0018	87	108	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C k F + L H+r H XP_023929776.1 87 VCKVCAKGFESLRALFGHMRHH 108 7*******************99 PP
2	zf-C2H2	11.1	0.0013	117	137	2	22
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 C+ Cgk F + L++H + XP_023929776.1 117 YCEECGKGFGSLKALTTHRHR 137 5*****************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence
MGQDQEQRHV CKLCNKSFMN GRVLGGHMRG HSHKNHNPTK GQKKVSKSNM DFENGIGRHT 60 RYGLREKPKM SSKFSGSNHN TSGQEIVCKV CAKGFESLRA LFGHMRHHSG RERSGIYCEE 120 CGKGFGSLKA LTTHRHRKSH SEKVMVCDES WTSSSRKTEM ENQSNSEIQG LVRRKRSNRM 180 RYKTTPNSFV SSLNESVSYT DIEQEVEEVA ICLMMLSRGI GNWGGFNLVT EFSDNDSVTY 240 EVKSLEQNKR TVNDNGGGIF ACEFNESLKM KKPRVEEFGS YVSDSKIVST ENDFGFGSDD 300 EKIELEVPLE KFYRDGECKM PKMEDVFGLA SYNDKTEKDI RNEMKNKPTE VELEEGFTED 360 YGLDSANSGS MNFGLNKKAK LAACGSHLRE KSCKKICTSD DSAILSKSNH SWENSEYKCK 420 TCNKNFHSYQ ALGGHQSIHR TENCPVLEIW NCKTSSQSNI VPETEANFEV VNLECRENSE 480 EQKISRVSLT SYELKERKEH KCHICFKVFA SGQALGGHKR AHLIKNSDVI SEETVVIKEE 540 ISDILNIVGI DLPIILEEDT NVGVGFKPSW VENDQEHELM GGLIPN

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence

MGQDQEQRHV CKLCNKSFMN GRVLGGHMRG HSHKNHNPTK GQKKVSKSNM DFENGIGRHT  60
RYGLREKPKM SSKFSGSNHN TSGQEIVCKV CAKGFESLRA LFGHMRHHSG RERSGIYCEE  120
CGKGFGSLKA LTTHRHRKSH SEKVMVCDES WTSSSRKTEM ENQSNSEIQG LVRRKRSNRM  180
RYKTTPNSFV SSLNESVSYT DIEQEVEEVA ICLMMLSRGI GNWGGFNLVT EFSDNDSVTY  240
EVKSLEQNKR TVNDNGGGIF ACEFNESLKM KKPRVEEFGS YVSDSKIVST ENDFGFGSDD  300
EKIELEVPLE KFYRDGECKM PKMEDVFGLA SYNDKTEKDI RNEMKNKPTE VELEEGFTED  360
YGLDSANSGS MNFGLNKKAK LAACGSHLRE KSCKKICTSD DSAILSKSNH SWENSEYKCK  420
TCNKNFHSYQ ALGGHQSIHR TENCPVLEIW NCKTSSQSNI VPETEANFEV VNLECRENSE  480
EQKISRVSLT SYELKERKEH KCHICFKVFA SGQALGGHKR AHLIKNSDVI SEETVVIKEE  540
ISDILNIVGI DLPIILEEDT NVGVGFKPSW VENDQEHELM GGLIPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	5e-22	C2H2 family protein