PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023929640.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 300aa    MW: 33991.4 Da    PI: 7.2614
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023929640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.6e-171966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd  l+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
   XP_023929640.1 19 RGPWTLEEDSMLIHYIACHGEGRWNLLAKCAGLKRTGKSCRLRWLNYL 66
                     89********************************************97 PP
2Myb_DNA-binding52.61e-1672115146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_023929640.1  72 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 115
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MPNVTKKVCN SNEDADLRRG PWTLEEDSML IHYIACHGEG RWNLLAKCAG LKRTGKSCRL  60
RWLNYLKPDI KRGNLTPQEQ LLILELHSKW GNRWSKIAQH LPGRTDNEIK NYWRTRVQKQ  120
ARQLNIESNS RTFLEAVRCF WMPRLLQKME QTSSPISTSN CSLTTMNAQG SSAPLSPNPI  180
ASSLSPSSIP PRNLLHFESY PTENSSSITS PSIHSSDSLK ISELPQVPEH PARPFHAFGN  240
TVYNTDCHFA DSSIYNMEAL NLDPISAMGA YENSLLDCHM ADGDWLSDNM AESLWNMNEM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-87MYB family protein