PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023928516.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 434aa    MW: 48890.3 Da    PI: 4.7716
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023928516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS323.34.9e-99604333374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL ecA+a+s++d +++++lL+ l+elasp+gd  q+la+yf++AL  + ++s++++yk+l++ ++++++ +++ +    f+evsP+++f+h++
  XP_023928516.1  60 RLLKECAQAISEKDSSKIHQLLWLLNELASPYGDCDQKLASYFLQALFCKATESGQRCYKTLTSVADKSHSFDSARKLILKFQEVSPWMTFGHVA 154
                     7899**********************************************************9999986555555455555************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledlel 191
                      N aIlea+ege+++HiiD++ + ++QWp+Ll+aLa+R++++p+l++T+v+  +s+ k  ++e+g+r++kfA+ +gvpfefn++   ++l++l+ 
  XP_023928516.1 155 SNGAILEALEGETKLHIIDISNTLCTQWPTLLEALATRNDDTPHLKLTVVVT-TSTVKSVMKEVGQRMEKFARLMGVPFEFNAImGLNHLAELTK 248
                     ****************************************************.77899*************************944569****** PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerik 284
                     e L v+++Ea++Vn++ +l r+      +e+ r +v+++++sl+P+vv++ve+ead+  ++ +F++ f e+l++y+  f++le+++ ++s+er +
  XP_023928516.1 249 EVLGVQEDEAIVVNCIGALRRVE-----VEE-RGAVIQMFQSLRPRVVTIVEEEADLssSRDDFVKCFEECLRFYTLYFEMLEESFVPTSNERLM 337
                     *********************97.....444.88*********************99544559******************************** PP

            GRAS 285 vErellgreivnvvace....gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.....eesgslvlgWkdrpLvsv 370
                     +Er   +r+iv v+ac     g+e  er+e+ ++W+erl+ea F+pv +s+++++++k+ll+++k  g+ +      +++  ++l+Wk++p++++
  XP_023928516.1 338 LERD-CSRSIVRVLACDdeksGEEDCERRERGSQWSERLKEA-FSPVGFSDDVVDDVKALLKRYK-AGWALVlpqgdHDDSGIYLTWKEEPVLWA 429
                     ****.89*********72222556789*************98.**********************.666666557756677888*********** PP

            GRAS 371 SaWr 374
                     SaW+
  XP_023928516.1 430 SAWK 433
                     ***8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    
MDITLFTPEE SPFFQSTQQS NGQAAIDMHS NNQPQNSHTS TSRSSDSGVL PSASGKWASR  60
LLKECAQAIS EKDSSKIHQL LWLLNELASP YGDCDQKLAS YFLQALFCKA TESGQRCYKT  120
LTSVADKSHS FDSARKLILK FQEVSPWMTF GHVASNGAIL EALEGETKLH IIDISNTLCT  180
QWPTLLEALA TRNDDTPHLK LTVVVTTSTV KSVMKEVGQR MEKFARLMGV PFEFNAIMGL  240
NHLAELTKEV LGVQEDEAIV VNCIGALRRV EVEERGAVIQ MFQSLRPRVV TIVEEEADLS  300
SSRDDFVKCF EECLRFYTLY FEMLEESFVP TSNERLMLER DCSRSIVRVL ACDDEKSGEE  360
DCERRERGSQ WSERLKEAFS PVGFSDDVVD DVKALLKRYK AGWALVLPQG DHDDSGIYLT  420
WKEEPVLWAS AWKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-140GRAS family protein