PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023928492.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 248aa MW: 28225.2 Da PI: 9.0572

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023928492.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99	1.8e-31	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gkly+y XP_023928492.1 9 KRIENKINRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSRGKLYDY 57 79**********************************************9 PP
2	K-box	94.4	1.9e-31	81	171	10	100
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 e++++s +qe+a Lk+++++Lq +qRhllGedL++Ls+keLq+Le+qLe +l+ R++K+++++e++eel+kke++l + n++L+ kl+e XP_023928492.1 81 IERETQSFYQEYAMLKAKYDSLQITQRHLLGEDLGPLSVKELQSLEKQLEGALQLARQRKTQIMIEEMEELRKKERQLGDLNQQLKIKLNE 171 56789*********************************************************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAHELSVLCD AEVALIIFSS RGKLYDYGNV 60 GITKTLERYQ QSCFTPQDNS IERETQSFYQ EYAMLKAKYD SLQITQRHLL GEDLGPLSVK 120 ELQSLEKQLE GALQLARQRK TQIMIEEMEE LRKKERQLGD LNQQLKIKLN EEGHTLKAIQ 180 TIWGSTSAAG NTNFAFHPSP LSPMECQTEP VLQIGFTHYA QEGSSGPKNM SNEGNFIPGW 240 GLATPFKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-104	MIKC_MADS family protein