PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023927979.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

TCP

Protein Properties

Length: 410aa MW: 43549.8 Da PI: 7.4768

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023927979.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.6	6.3e-40	81	205	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + XP_023927979.1 81 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrssy 175 789*************************************************************8888877665555555555333334444444 PP TCP 89 .............................k 89 + XP_023927979.1 176 fnpsfniqqhqqqqqqrrssslfpgiglsS 205 433322222222233333334555555541 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MDGGDEQLHR PNFPFQLLEK KEDEPCSTSP YPSLAISQDP NNNNNNNNTC TTALTTTLQP 60 TNSTTSSAIA AAAAEASKKP PPKRTSTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH 120 KSDGETIEWL LQQAEPAVIA ATGTGTIPAN FTSLNISLRS SGSSMSVPSQ LRSSYFNPSF 180 NIQQHQQQQQ QRRSSSLFPG IGLSSESTST LLNFQTSSSL NTMLQAKQEL RDATSSLDLS 240 ETTEESIGGR KRRQEQDLSP QSQQHQMGSY LLQSSAGAIP ASHGQIPANF WMVANSNNQV 300 MSGDPIWTFP SVNNSAALYR GNMSSGLHFM NFPAPMALLP SQQLGSGIGS GGGGGGGGGS 360 GGSNMSDGHL NMLAGLNPYR PSVSEASGSH SHHGGGGGSD DRHDTTSHHS

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MDGGDEQLHR PNFPFQLLEK KEDEPCSTSP YPSLAISQDP NNNNNNNNTC TTALTTTLQP  60
TNSTTSSAIA AAAAEASKKP PPKRTSTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH  120
KSDGETIEWL LQQAEPAVIA ATGTGTIPAN FTSLNISLRS SGSSMSVPSQ LRSSYFNPSF  180
NIQQHQQQQQ QRRSSSLFPG IGLSSESTST LLNFQTSSSL NTMLQAKQEL RDATSSLDLS  240
ETTEESIGGR KRRQEQDLSP QSQQHQMGSY LLQSSAGAIP ASHGQIPANF WMVANSNNQV  300
MSGDPIWTFP SVNNSAALYR GNMSSGLHFM NFPAPMALLP SQQLGSGIGS GGGGGGGGGS  360
GGSNMSDGHL NMLAGLNPYR PSVSEASGSH SHHGGGGGSD DRHDTTSHHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	6e-56	TCP family protein