PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023927384.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family NF-YA
Protein Properties Length: 341aa    MW: 37329.8 Da    PI: 9.7542
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023927384.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1011.2e-31170226158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQy++Il+RRq+Rak+e +kk  +k rkpylheSRh hA+rR+Rg+gGrF
  XP_023927384.1 170 EEPVFVNAKQYHGILRRRQSRAKAELQKKA-IKVRKPYLHESRHLHAMRRARGCGGRF 226
                     69***************************9.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MMPAKLGNED RRLENCGPTA LQSTVYNPWW SGVGSNGSLG ESGSKSSSME HLNGSVKNGV  60
IQLKANGQLD GGANFNKETQ VTVASQSDGN IGQEHQHVNH VPSSTPKMGE HLDPNSNMEL  120
VGHSIVLTPY MYSDPHYGGM LAPYGHQAMI PAQLYGMHQA RMPLPLEMEE EPVFVNAKQY  180
HGILRRRQSR AKAELQKKAI KVRKPYLHES RHLHAMRRAR GCGGRFLNTK KLDNDANPTS  240
EKGMNMGANS SVQPTSKSGS EYLPNNGNGK LDSSHNKQEG SRSMIHNMHK AHNLSNGNSN  300
GHGLSSTYHS LFSDDKEGGY MGQQRESMHM NGIARGALPI K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.18e-40NF-YA family protein