PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023927156.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family BBR-BPC
Protein Properties Length: 286aa    MW: 31666.2 Da    PI: 10.4001
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023927156.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3469e-10612861301
       GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllal 84 
                     md d+s + rn+gyyep++slk +lglqlmssi+e+     r++ +   ++++a+++rd         m++ +rd+++++        ++k++++
  XP_023927156.1   1 MDGDNSLNmRNWGYYEPTTSLKGHLGLQLMSSIPEKPLIGgRNAAVMAGGNNGAFHHRDigvshstfpMDY-MRDAWINQ--------REKFINV 86 
                     899999999*************************8876545777776778999*****************9.99****99........78999*9 PP

       GAGA_bind  85 llvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv 178
                     l++ n       ++++vl++t+s++++q+     + +++ +  r+e+++++    e++ ++ke+   kkrq ak+pk++k+kk+k+ ++++k  +
  XP_023927156.1  87 LPTPN-------PNYSVLPETSSAHHMQM-----V-QQPPDlSRDERIIST----EETVVEKENGPIKKRQGAKSPKSPKEKKAKRAPRATKA-E 163
                     99766.......47899***********9.....3.333441344443333....345667888899999****************7777755.5 PP

       GAGA_bind 179 kkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273
                     +++sa++ + a kk++++v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmS gafkk+LekLa
  XP_023927156.1 164 SSPSAPRARSAVKKTTEIVINGIDMDISGIPIPVCSCTGTPQQCYRWGSGGWQSACCTTNMSIYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLA 258
                     555656778889*********************************************************************************** PP

       GAGA_bind 274 aeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     aeGy++sn +DL++hWAkHGtnkfvtir
  XP_023927156.1 259 AEGYNFSNQIDLRTHWAKHGTNKFVTIR 286
                     ***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MDGDNSLNMR NWGYYEPTTS LKGHLGLQLM SSIPEKPLIG GRNAAVMAGG NNGAFHHRDI  60
GVSHSTFPMD YMRDAWINQR EKFINVLPTP NPNYSVLPET SSAHHMQMVQ QPPDLSRDER  120
IISTEETVVE KENGPIKKRQ GAKSPKSPKE KKAKRAPRAT KAESSPSAPR ARSAVKKTTE  180
IVINGIDMDI SGIPIPVCSC TGTPQQCYRW GSGGWQSACC TTNMSIYPLP MSTKRRGARI  240
AGRKMSIGAF KKVLEKLAAE GYNFSNQIDL RTHWAKHGTN KFVTIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.12e-86BBR-BPC family protein