PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023925259.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB_related

Protein Properties

Length: 769aa MW: 83286 Da PI: 6.546

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023925259.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49	1.4e-15	24	68	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E+ ++++a k++G W +I +++g ++t+ q++s+ qk+ XP_023925259.1 24 RERWTEDEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence
MDTYSSGEEL VIKARKPYTI TKQRERWTED EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEALVKG VPIGQALDID IPPPRPKRKP SNPYPRKTSI GAPTSQVGTK 120 DGKLFTSVSS LDCKQALDLE KEPLPEKPNG DEKPENAKDN QDDNCSEVFT LHQEVHCSSV 180 SSANRSSVPT PVALRNSSTL REFVPSMKRS ITQDETNESY VTIELKGNQK LEKADAKQTI 240 QDTGTSNGSK LGNHNVPHEK PIQGDKTQDL NCALPMDEMQ ATQNYPRHVP VQVVDGSLGT 300 CAQTPSSDMS FQDSIFHPMG EVHGHHNPFT NPAASATTEH QNNVPRSSVN QSFPAFHPPF 360 TPIHHNQDNY QSFLHMSSTF SSLIVSTLMQ NPAAHAAASF AATVWPYAKV EASADSPAST 420 QGVFPLRQMG STPSMAAIAA ATVAAATAWW AAHGLVPLCA PLPTAFTCNP ASTAAVPPTD 480 SGQAPAAKTE GEVNTLQNPP LQQLDPEYSE AVQAQHSASK LLIPSSSDSE ESGGAKLNSG 540 PKATDHENAV AATELHDSNK TKGRKLVDRS SCGSNSTSSS DRETDALEKQ EKGKEEPKEP 600 DANQSAADTS NRCCCSSSSR SVSYMNDSWK SVSEEGRLAF QALFSREVLP QSFSPPHDLK 660 NKGNQKDNTT DDKQNANEND GNASQLDLNS QTSGSCSGQP GILNFECNNN GEGLLSIGLG 720 YGKLKARRTG FKPYKRCSVE AKENRVANAS SQGEEKGPKR IRLEGEASI

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence

MDTYSSGEEL VIKARKPYTI TKQRERWTED EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KLEKEALVKG VPIGQALDID IPPPRPKRKP SNPYPRKTSI GAPTSQVGTK  120
DGKLFTSVSS LDCKQALDLE KEPLPEKPNG DEKPENAKDN QDDNCSEVFT LHQEVHCSSV  180
SSANRSSVPT PVALRNSSTL REFVPSMKRS ITQDETNESY VTIELKGNQK LEKADAKQTI  240
QDTGTSNGSK LGNHNVPHEK PIQGDKTQDL NCALPMDEMQ ATQNYPRHVP VQVVDGSLGT  300
CAQTPSSDMS FQDSIFHPMG EVHGHHNPFT NPAASATTEH QNNVPRSSVN QSFPAFHPPF  360
TPIHHNQDNY QSFLHMSSTF SSLIVSTLMQ NPAAHAAASF AATVWPYAKV EASADSPAST  420
QGVFPLRQMG STPSMAAIAA ATVAAATAWW AAHGLVPLCA PLPTAFTCNP ASTAAVPPTD  480
SGQAPAAKTE GEVNTLQNPP LQQLDPEYSE AVQAQHSASK LLIPSSSDSE ESGGAKLNSG  540
PKATDHENAV AATELHDSNK TKGRKLVDRS SCGSNSTSSS DRETDALEKQ EKGKEEPKEP  600
DANQSAADTS NRCCCSSSSR SVSYMNDSWK SVSEEGRLAF QALFSREVLP QSFSPPHDLK  660
NKGNQKDNTT DDKQNANEND GNASQLDLNS QTSGSCSGQP GILNFECNNN GEGLLSIGLG  720
YGKLKARRTG FKPYKRCSVE AKENRVANAS SQGEEKGPKR IRLEGEASI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.3	1e-135	MYB_related family protein