PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023925132.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

FAR1

Protein Properties

Length: 850aa MW: 97063.2 Da PI: 7.8776

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023925132.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.1	1.9e-20	46	130	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 YneYA + GFs+rk+ +++ ng i +r+fvCsk+g++e e+ + + ++ ++ tgC+a+++ + ++ w v++++ HnHe+a XP_023925132.1 46 LYNEYALKRGFSIRKAVKREY--NGVIRQREFVCSKQGFKEFEDPS-NVKKYHNLDVTTGCRARIRFDVK-NDIWSVSHFNDTHNHEFA 130 7*************98887..***************9999.8888999999*******99.9*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence
MDFSNNAFVA VGDNDKREKF ENVTLGECDE IKIGMQVRSE EEAYNLYNEY ALKRGFSIRK 60 AVKREYNGVI RQREFVCSKQ GFKEFEDPSN VKKYHNLDVT TGCRARIRFD VKNDIWSVSH 120 FNDTHNHEFA TPEERCNLRS GRKVLPAHGN IISTMVSSGI KAIKSYSFLS KELGGANNVG 180 FSRRDCHNFV QTKRKEIMEA GDGQSIINHF KEKQSEDPMF FYSVQVDQDN RIANFFWRDG 240 RSKVDYDSFG DVFIFDTTYR TNKYNLICAP FVGINHHWNN VLFGCAFLSD ETTQSFIWLF 300 ETFLTAMGGR QPKSIFTDQD QAMANAINMV FSESRHRLCL WHISKNAQKN LVGIYGVPDF 360 NQRFNHCLYG GCSNEMEFES TWSKMIEMHN LKDNTWLDRL YQIREKWCPT FNLDFFSAKM 420 KSTQRSESTN SVFHQIMKTS MSLIEVIKFY EEKAAQMRQD EINEDFRCKN GAPGKVHKHG 480 GILSHAAKVY TLALFGMFEE EFNSGMGLNC VETNHCEDNF TYSLSSGESR RIYIVHFNRA 540 ELSICCDCKL FETLGLLCCH ALRVFLVNNV NNIPDKYISS RWTKDAKKRL CCSVDSFKSN 600 EKSTHVLRMS NLSLLWYKCC DKAALTDHGT KIAMDSLSEL LCNLEKSLAD TNKVENVGKK 660 CPQDLIHDDD VQPCLDGKRP ILDPPHVRKK GITNFRIKSQ LEKKQRKKKV KDATTSKAPK 720 TISMVQDVQT SFFPPEMFVA YPMINFTTMF QESTSMSHLN QEILIGSHFA SATSGYDENA 780 AIVSTIGILK HQMDAELEIQ KQHILSPWQC PSVALGRSNL AGCWNGAGGA SASPPRLTCP 840 DSSRDSCNPP

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence

MDFSNNAFVA VGDNDKREKF ENVTLGECDE IKIGMQVRSE EEAYNLYNEY ALKRGFSIRK  60
AVKREYNGVI RQREFVCSKQ GFKEFEDPSN VKKYHNLDVT TGCRARIRFD VKNDIWSVSH  120
FNDTHNHEFA TPEERCNLRS GRKVLPAHGN IISTMVSSGI KAIKSYSFLS KELGGANNVG  180
FSRRDCHNFV QTKRKEIMEA GDGQSIINHF KEKQSEDPMF FYSVQVDQDN RIANFFWRDG  240
RSKVDYDSFG DVFIFDTTYR TNKYNLICAP FVGINHHWNN VLFGCAFLSD ETTQSFIWLF  300
ETFLTAMGGR QPKSIFTDQD QAMANAINMV FSESRHRLCL WHISKNAQKN LVGIYGVPDF  360
NQRFNHCLYG GCSNEMEFES TWSKMIEMHN LKDNTWLDRL YQIREKWCPT FNLDFFSAKM  420
KSTQRSESTN SVFHQIMKTS MSLIEVIKFY EEKAAQMRQD EINEDFRCKN GAPGKVHKHG  480
GILSHAAKVY TLALFGMFEE EFNSGMGLNC VETNHCEDNF TYSLSSGESR RIYIVHFNRA  540
ELSICCDCKL FETLGLLCCH ALRVFLVNNV NNIPDKYISS RWTKDAKKRL CCSVDSFKSN  600
EKSTHVLRMS NLSLLWYKCC DKAALTDHGT KIAMDSLSEL LCNLEKSLAD TNKVENVGKK  660
CPQDLIHDDD VQPCLDGKRP ILDPPHVRKK GITNFRIKSQ LEKKQRKKKV KDATTSKAPK  720
TISMVQDVQT SFFPPEMFVA YPMINFTTMF QESTSMSHLN QEILIGSHFA SATSGYDENA  780
AIVSTIGILK HQMDAELEIQ KQHILSPWQC PSVALGRSNL AGCWNGAGGA SASPPRLTCP  840
DSSRDSCNPP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	688	709	RKKGITNFRIKSQLEKKQRKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-112	FAR1 family protein