PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023924472.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

HB-other

Protein Properties

Length: 1208aa MW: 135502 Da PI: 7.6655

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023924472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39	1.4e-12	5	54	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t++ql+ L++l+ +n+yp++e +e+ A+ lgLt +qV+ WF rR ++k+ XP_023924472.1 5 TASQLQSLQQLYLENKYPTKELMEDNAAALGLTYKQVRGWFIERRRRDKR 54 899*********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1208 aa Download sequence
MARKTASQLQ SLQQLYLENK YPTKELMEDN AAALGLTYKQ VRGWFIERRR RDKRENGSIV 60 PSHSASSKKN PILTTTGTIA ARKVLKGDPL LHKAKASFSS IANRPSTVET RIPKRKRKPI 120 LLQHLLTSDY ILKKVFRKEG PPLGVEFDSL PSRAFCYRTD PKNSHPSCQD NQGAGKRLKV 180 SEQAILSHQV SNKKRAPAKK HGIGKGLMAP GKKHGIGKGL MAPGKKHGIG KGLMTQAKKH 240 GIGKGLMTVW RATNPDGGEI PTGIDYTDRE VVVSTAPKKP QHRVKRSQQA PVAKQVSLRN 300 KSQDRRKQST RRREVEHNQD EHLKQPDIVK CELALEGAIS RDYLNHVAMF VDDEELELQE 360 LQAGPNPLRC SDHFAANGIH GCSLCKDLLA KFPPNSVKMK HPFCTQPWDS SPEIVKKLFK 420 VFHFLYTYAV AVDICSFTLD EFAQSFHDKD SLLLGKIHVA LLKLLISEVE AELSNGYFPP 480 HLSISCNFLA LLHSAENQKV ALEFWKRALN PLTWTEILRQ VLVAAGFGSK QGAMRREALN 540 KEMNLMVKYG LRPGTLKCEL FKILSEQGNN GLKVSELAKS LPIAELNIAS TTEELEPLIC 600 SSLSSDITLF EKISSSSYRL RISSVAKEVD EFQSDTEDSG SVDDDPNDCG PCSDSDDSGC 660 ESGNSNSRNF KYMNHHKSQN NMLIVHNEID ESHPGEVWLL GLMEGEYSDL SIEEKLNALV 720 AITDLLLAGS SFRVEDPTQA IAECTPNIHH YGSGAKLKRS SAKQHSIDRP SWGYAGQMHS 780 IQEAYSLFKF HPVDSSVSIS KSYEKERSSG EGENVKEKEV ESGLHLMQSV FLGSDRRYNR 840 YWLFLGPCSA LGPCSAYDPG HRRVYFESSE DGHWEVIDTV EDLCALLSVL DERGKREAIL 900 IESLEKRQAF LLQAMSNKIV KSAGTRHLTQ SDQSELDMVR EDSCSPVSDV DNLSLTETIK 960 DSLPSSGAVV LDVGNKGEEQ QERWNRLQEF DSWIWNSFYS NLNAVKHGKR SYLDSLARCE 1020 SCHDLYWRDE KHCRICHTTF ELDFDLEERY AIHEATCREK EDSEILFPQH KVLSSQIQSL 1080 KAAIHAIESV MPEEALVGAW IKSAHKLWVK RLRRTSSMAD LLQVLADFVG AINEDWLCEC 1140 NGQQVSFNII EETIASFASM PQTSSAVALW LVELDALIAP YLEKVRFQKK PEIFTKGRCA 1200 PKQSMQLS

Sequence ? help Back to Top

Protein Sequence Length: 1208 aa Download sequence

MARKTASQLQ SLQQLYLENK YPTKELMEDN AAALGLTYKQ VRGWFIERRR RDKRENGSIV  60
PSHSASSKKN PILTTTGTIA ARKVLKGDPL LHKAKASFSS IANRPSTVET RIPKRKRKPI  120
LLQHLLTSDY ILKKVFRKEG PPLGVEFDSL PSRAFCYRTD PKNSHPSCQD NQGAGKRLKV  180
SEQAILSHQV SNKKRAPAKK HGIGKGLMAP GKKHGIGKGL MAPGKKHGIG KGLMTQAKKH  240
GIGKGLMTVW RATNPDGGEI PTGIDYTDRE VVVSTAPKKP QHRVKRSQQA PVAKQVSLRN  300
KSQDRRKQST RRREVEHNQD EHLKQPDIVK CELALEGAIS RDYLNHVAMF VDDEELELQE  360
LQAGPNPLRC SDHFAANGIH GCSLCKDLLA KFPPNSVKMK HPFCTQPWDS SPEIVKKLFK  420
VFHFLYTYAV AVDICSFTLD EFAQSFHDKD SLLLGKIHVA LLKLLISEVE AELSNGYFPP  480
HLSISCNFLA LLHSAENQKV ALEFWKRALN PLTWTEILRQ VLVAAGFGSK QGAMRREALN  540
KEMNLMVKYG LRPGTLKCEL FKILSEQGNN GLKVSELAKS LPIAELNIAS TTEELEPLIC  600
SSLSSDITLF EKISSSSYRL RISSVAKEVD EFQSDTEDSG SVDDDPNDCG PCSDSDDSGC  660
ESGNSNSRNF KYMNHHKSQN NMLIVHNEID ESHPGEVWLL GLMEGEYSDL SIEEKLNALV  720
AITDLLLAGS SFRVEDPTQA IAECTPNIHH YGSGAKLKRS SAKQHSIDRP SWGYAGQMHS  780
IQEAYSLFKF HPVDSSVSIS KSYEKERSSG EGENVKEKEV ESGLHLMQSV FLGSDRRYNR  840
YWLFLGPCSA LGPCSAYDPG HRRVYFESSE DGHWEVIDTV EDLCALLSVL DERGKREAIL  900
IESLEKRQAF LLQAMSNKIV KSAGTRHLTQ SDQSELDMVR EDSCSPVSDV DNLSLTETIK  960
DSLPSSGAVV LDVGNKGEEQ QERWNRLQEF DSWIWNSFYS NLNAVKHGKR SYLDSLARCE  1020
SCHDLYWRDE KHCRICHTTF ELDFDLEERY AIHEATCREK EDSEILFPQH KVLSSQIQSL  1080
KAAIHAIESV MPEEALVGAW IKSAHKLWVK RLRRTSSMAD LLQVLADFVG AINEDWLCEC  1140
NGQQVSFNII EETIASFASM PQTSSAVALW LVELDALIAP YLEKVRFQKK PEIFTKGRCA  1200
PKQSMQLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	47	52	ERRRRD
2	48	53	RRRRDK
3	48	55	RRRRDKRE
4	113	119	PKRKRKP
5	114	138	KRKRKPILLQHLLTSDYILKKVFRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-127	HB-other family protein