PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023921601.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 431aa MW: 47848.1 Da PI: 6.2848

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023921601.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3.1e-05	113	134	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C+k F++ +L H+r+H XP_023921601.1 113 TCCICNKDFPSTKSLSGHMRSH 134 8********************9 PP
2	zf-C2H2	16.5	2.3e-05	307	329	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+dCgk+F++ L H ++H XP_023921601.1 307 YKCSDCGKPFPTFQALGGHRSSH 329 9************9999999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MDIDEQENQL EEMEKVKGSS SLETLAYGEN KRPKATKESE SDQNIHQDIR ICDFCGKTFN 60 GGKALGGHRR SHLQAMKLDL SKNSIKKHVF EGHTDSGLAA KTVNYDLMAD KLTCCICNKD 120 FPSTKSLSGH MRSHPDRDWR GIQPPSIADQ NSPSSSSGRS YSEDHEVDDD DDLHHNSSAE 180 TYARSGVDLL SYVSNWSKSD KRGRKCIGST EAAQNLMCLS RDKSFFSLSP YLAARSNSRG 240 KEEQEKHIVE LTESKKTKGG SPGKPFKDSY EVSVKNMKKK KVKNWKKMLR DLEQEDLGLI 300 DDDKGSYKCS DCGKPFPTFQ ALGGHRSSHN KEKKKQATNA LFVDDEIEEE SIIKTFPMNG 360 GLDDGHRRCD STGLVEAPTS SEVVSPGGTN EAKVASSGEV NQSGQRILDF DLNQPCNLME 420 DEGIESTFNL L

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MDIDEQENQL EEMEKVKGSS SLETLAYGEN KRPKATKESE SDQNIHQDIR ICDFCGKTFN  60
GGKALGGHRR SHLQAMKLDL SKNSIKKHVF EGHTDSGLAA KTVNYDLMAD KLTCCICNKD  120
FPSTKSLSGH MRSHPDRDWR GIQPPSIADQ NSPSSSSGRS YSEDHEVDDD DDLHHNSSAE  180
TYARSGVDLL SYVSNWSKSD KRGRKCIGST EAAQNLMCLS RDKSFFSLSP YLAARSNSRG  240
KEEQEKHIVE LTESKKTKGG SPGKPFKDSY EVSVKNMKKK KVKNWKKMLR DLEQEDLGLI  300
DDDKGSYKCS DCGKPFPTFQ ALGGHRSSHN KEKKKQATNA LFVDDEIEEE SIIKTFPMNG  360
GLDDGHRRCD STGLVEAPTS SEVVSPGGTN EAKVASSGEV NQSGQRILDF DLNQPCNLME  420
DEGIESTFNL L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	2e-16	C2H2 family protein