PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023921225.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 748aa MW: 80856.8 Da PI: 9.0116

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023921225.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.9e-05	588	613	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+C+ C+++F ++ nL++H r H XP_023921225.1 588 YTCTyhGCTQRFDSQVNLQKHKREvH 613 8999***************988 PP
2	zf-C2H2	13.5	0.00022	686	704	6	23
TTEEESSHHHHHHHHHH.T CS zf-C2H2 6 CgksFsrksnLkrHirt.H 23 C+++Fsr+++L+rH t H XP_023921225.1 686 CNTVFSRPYDLTRHEDTiH 704 **************99888 PP
3	zf-C2H2	21	9e-07	712	736	2	23
EETTTT..EEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCg..ksFsrksnLkrHirt.H 23 +Cp C k+Fsr++ L+rH+r+ H XP_023921225.1 712 RCPMCReeKTFSRNDALTRHMRVvH 736 7*********************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence
MYTASSLVVP TLPNSLEPPP TTTTTWRAPH PFAFTSPRPS PSHTFTPPRP GSTVATHFDQ 60 HPIQQSHHSI AAATTSQRRP LCMNNVHHPS LHTAQHPLAQ YLSSSSSDLS PPNFDTAQYY 120 SPSLAAAGTP TSDWRAQHTS MGGPTVTAHN ALKRTRPHQR TPSASTVNST GPASPYTQNI 180 AYPSIVGSDY SPAHFAEYPK VLTPSHTPVS SNLLAAGYVP NPSYQTFSAH QAMKSFAIDH 240 HVEDYTPDYS HSSRRSMSSR GNDSPATPLS GVGDPAEASQ YNVVGSNGET WSYKATMGLD 300 DCLLFGEAEH VRPANPNVQL FRTESQAYQD ELFNPSLAVS AAPAHTSKPA RNFLSPHSSV 360 MSQRLQTANI ARSQSPNPAS AVSRERSPFR TGSPFAANSF PASPNGVGTA ASMRQQQKEQ 420 AEQAEYARNR PQLNREPTKT ISPKDALLDY NESDQTPLFQ DNVPIGYKQH AGGAEQWPQG 480 FSFGNLQMQA TPKFRATSGD GMAGNDVYGY MNLPPNATPQ GQIPNMSYPA ASYAPAKMTS 540 YPNSDATPAF PATLTSMESS TGSADDENNH APSIVRRPTD TRANTGTYTC TYHGCTQRFD 600 SQVNLQKHKR EVHRPQPPPP PSSSHEAASN GSATAASSGS GSESPRSSAS PDPSTAGMTS 660 AAIMARNSQA GPHRCTRINP STNKPCNTVF SRPYDLTRHE DTIHNGRKQK VRCPMCREEK 720 TFSRNDALTR HMRVVHPEAE AFGKRGRS

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence

MYTASSLVVP TLPNSLEPPP TTTTTWRAPH PFAFTSPRPS PSHTFTPPRP GSTVATHFDQ  60
HPIQQSHHSI AAATTSQRRP LCMNNVHHPS LHTAQHPLAQ YLSSSSSDLS PPNFDTAQYY  120
SPSLAAAGTP TSDWRAQHTS MGGPTVTAHN ALKRTRPHQR TPSASTVNST GPASPYTQNI  180
AYPSIVGSDY SPAHFAEYPK VLTPSHTPVS SNLLAAGYVP NPSYQTFSAH QAMKSFAIDH  240
HVEDYTPDYS HSSRRSMSSR GNDSPATPLS GVGDPAEASQ YNVVGSNGET WSYKATMGLD  300
DCLLFGEAEH VRPANPNVQL FRTESQAYQD ELFNPSLAVS AAPAHTSKPA RNFLSPHSSV  360
MSQRLQTANI ARSQSPNPAS AVSRERSPFR TGSPFAANSF PASPNGVGTA ASMRQQQKEQ  420
AEQAEYARNR PQLNREPTKT ISPKDALLDY NESDQTPLFQ DNVPIGYKQH AGGAEQWPQG  480
FSFGNLQMQA TPKFRATSGD GMAGNDVYGY MNLPPNATPQ GQIPNMSYPA ASYAPAKMTS  540
YPNSDATPAF PATLTSMESS TGSADDENNH APSIVRRPTD TRANTGTYTC TYHGCTQRFD  600
SQVNLQKHKR EVHRPQPPPP PSSSHEAASN GSATAASSGS GSESPRSSAS PDPSTAGMTS  660
AAIMARNSQA GPHRCTRINP STNKPCNTVF SRPYDLTRHE DTIHNGRKQK VRCPMCREEK  720
TFSRNDALTR HMRVVHPEAE AFGKRGRS