PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023920663.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family ARF
Protein Properties Length: 938aa    MW: 104244 Da    PI: 6.8296
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023920663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18.1e-24127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_023920663.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_023920663.1 218 KNQLLLGIRRA 228
                     9999****997 PP
2Auxin_resp119.23.2e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpv+WpnS+Wrs+k
  XP_023920663.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVChTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVK 336
                     79********************************97689******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 938 aa     Download sequence    
MRLSSAGFSP QSQEGEQRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNRE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLNPQEQKDA YLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVCHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVKWPNS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPSFHGIKDE DLGVNSPLMW LRDNGDRGIQ SLNFQGIGVS  420
PWMQPRLDAS MLGLPTDMYQ AMAAAALQEM RAVDPSKAPP TSLLQFQQPQ NLQSRSAALM  480
QPQMVQHSQS QQAFLQSVQE NQHQSHSQAQ AQSQLLQQHL QHQHSFNNHH HHHHQQQQQQ  540
QQQQQQQQQQ HQQQQQHQHQ HQQQQQQQQQ QPQPQPQPQL VDHQQISSAV STMSQFASSS  600
QSQSPSLQAI PSLCQQQSFS DSNGNPVTSP IVSPLHSLLG SFPQDESSHL LNLPRTSSLI  660
SSTTWPSKRA AVEPLFSSGA SHCVLPQAEK LGMPQANISS NSISLPPFPG RECSIDQGST  720
DPHSHLLFGV NIEPSTLLMQ NGMSGLKGVG SDSNSTTVPF PSSNYMSTAG SDFSLNPAVT  780
PSSCIDESGF LQSPENVGQV NPPTRTFVKV HKSGSFGRSL DITKFSSYHE LRGELAQMFG  840
LEGELEDPLR SGWQLVFVDR ENDVLLLGDD PWPEFVNSVW CIKILSPQEV QQMGKRGLEL  900
LNSVPIQRLS SNSCDDYAGR QDSRNLSSGI TSVGSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein