PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023919696.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 464aa MW: 50766.6 Da PI: 8.7771

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023919696.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.7	1.1e-06	371	395	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp +Cgk F ++ +L++H+r H XP_023919696.1 371 YRCPwaNCGKGFASSNDLNHHQRYH 395 9**********************99 PP
2	zf-C2H2	11.8	0.00077	404	424	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F + +++rH++tH XP_023919696.1 404 CTVCGKDFLHLKDMRRHQNTH 424 ********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MSVPPSRTDW PSVLPLEDTI YGSTSYTNTI GDIDQLRGPS AQYSFENDIQ VGPQIALNES 60 FDDPCAWSNE VATYPQYPPK PSSQRIGPLD YEQGGALQWQ DPEPQQYMQA LMPQAPPYGQ 120 EAIYNAIDPL QSQQGQLAST SQTHHLNIAA APSPPDSLRM TPNTYPMQND AMTAQYDLAN 180 TIFASTTRTP ASLPPNATPE PHPGPPKRKR SFSDTAIPNV TAHFSPTPGH PPYVSKRPKL 240 GLLTTYGPSG RCLGHSALKM CQYCDDKSQV AYATPSPQGP TSAPAEWLEG MASNSNWQLG 300 QSTLSPGIHN WNRAARLPGE FHGVPAHASG THLQPPTTPT GAAPSPTASS VASSARTLTK 360 RNRDEMTHGA YRCPWANCGK GFASSNDLNH HQRYHTTGRR PHLCTVCGKD FLHLKDMRRH 420 QNTHAVGSAS KRHFCLRDSC RGKKGYSRKD HLARHMRMKH PAGL

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MSVPPSRTDW PSVLPLEDTI YGSTSYTNTI GDIDQLRGPS AQYSFENDIQ VGPQIALNES  60
FDDPCAWSNE VATYPQYPPK PSSQRIGPLD YEQGGALQWQ DPEPQQYMQA LMPQAPPYGQ  120
EAIYNAIDPL QSQQGQLAST SQTHHLNIAA APSPPDSLRM TPNTYPMQND AMTAQYDLAN  180
TIFASTTRTP ASLPPNATPE PHPGPPKRKR SFSDTAIPNV TAHFSPTPGH PPYVSKRPKL  240
GLLTTYGPSG RCLGHSALKM CQYCDDKSQV AYATPSPQGP TSAPAEWLEG MASNSNWQLG  300
QSTLSPGIHN WNRAARLPGE FHGVPAHASG THLQPPTTPT GAAPSPTASS VASSARTLTK  360
RNRDEMTHGA YRCPWANCGK GFASSNDLNH HQRYHTTGRR PHLCTVCGKD FLHLKDMRRH  420
QNTHAVGSAS KRHFCLRDSC RGKKGYSRKD HLARHMRMKH PAGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	9e-06	C2H2 family protein