PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023919554.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 484aa MW: 54347.3 Da PI: 7.4367

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023919554.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	1.9e-12	299	342	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+ri +++++Lr l+Pk +K++ a+i+ A+eYI++Lq XP_023919554.1 299 VTERKRRHRITDGLFTLRALVPKI-----TKMDRAAIVGDAIEYIQELQ 342 57*******************7.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MEDTMRGLER TVEWLRPFVQ TKTWDYCVVW KLGDDPSRFI EWMGCCCSGG YGFVANVKEE 60 RGVEHHLSPL CKDGHFQHPI STKACEALAQ LPSSMPLYSG VHGEVVISTQ PRWICNAKAL 120 DSDISNDTLG TRVLIPVVGG LIELFVAKHI PKDQKTIEFI TAQFNISLDQ DAKIVWNSAN 180 VKLSEHHLAP LPEEYSQHWP GIQALSPVTQ FSSYPSVEGS SSESNRSCEC PFDLKCGYIP 240 LHGSMNKSNG KSSGSKKPEY NVSSLKTKLA LNCGNVVEKE KEKVIQEPKT KKFHSKNLVT 300 ERKRRHRITD GLFTLRALVP KITKMDRAAI VGDAIEYIQE LQKEVKQLHD ELREMEEEDC 360 EKNKAELKIL KPNRTNGGTT CFAPTEQKPE SSSLGEKKQT EVQVEVSQIG QRDFLIKIIC 420 EQKRGGFARF MEAIDSLGLQ VADANVTTFC GKVLNILKVE ANMDIKPKKL RDALLELVDC 480 RLSQ

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MEDTMRGLER TVEWLRPFVQ TKTWDYCVVW KLGDDPSRFI EWMGCCCSGG YGFVANVKEE  60
RGVEHHLSPL CKDGHFQHPI STKACEALAQ LPSSMPLYSG VHGEVVISTQ PRWICNAKAL  120
DSDISNDTLG TRVLIPVVGG LIELFVAKHI PKDQKTIEFI TAQFNISLDQ DAKIVWNSAN  180
VKLSEHHLAP LPEEYSQHWP GIQALSPVTQ FSSYPSVEGS SSESNRSCEC PFDLKCGYIP  240
LHGSMNKSNG KSSGSKKPEY NVSSLKTKLA LNCGNVVEKE KEKVIQEPKT KKFHSKNLVT  300
ERKRRHRITD GLFTLRALVP KITKMDRAAI VGDAIEYIQE LQKEVKQLHD ELREMEEEDC  360
EKNKAELKIL KPNRTNGGTT CFAPTEQKPE SSSLGEKKQT EVQVEVSQIG QRDFLIKIIC  420
EQKRGGFARF MEAIDSLGLQ VADANVTTFC GKVLNILKVE ANMDIKPKKL RDALLELVDC  480
RLSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	6e-49	bHLH family protein