PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023919483.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 484aa    MW: 54960.4 Da    PI: 4.9977
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023919483.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.72.9e-1081074833374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     e+Lle A+a+++++ +++q+l++ l+el+sp+gd+ q+la+yf++AL +r+++s++++y++l++ ++++ + +++ + +  f+evsP+ +f+h++
  XP_023919483.1 107 EALLETAQAIADKNSNRVQQLMWMLNELSSPYGDTDQKLASYFLQALFSRMTDSGERCYRTLASASDKTCSFESTRKTVLKFQEVSPWTTFGHVA 201
                     689***********************************************************9888886555555555555************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvak.rle 187
                     +N aIlea+ege ++Hi+Df+ ++++QWp+Ll+aLa+R++++p+lR+T+v++ +sg     ++ ++e+g+r++kfA+ +gvpf+fnv+++  +l+
  XP_023919483.1 202 CNGAILEALEGEPKLHIVDFSNTYCTQWPTLLEALATRTDETPHLRLTTVVATKSGgvaaVQKVMKEIGNRMEKFARLMGVPFKFNVIHHVgDLS 296
                     ****************************************************99889999999************************96656999 PP

            GRAS 188 dlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpr 277
                     +++l +eL++k +Eala+n+v  lh++     +++++rd +++ +++l+P++++vve+ead++ +    +F+++f e+l+++ + +++le+++++
  XP_023919483.1 297 EFNLaSELDIKDDEALAINCVNTLHSTT----TVDNRRDYLISNFRRLQPRIITVVEEEADLDVGvdgvEFVKGFQECLRWFRVYLEALEESFSK 387
                     9997368*****************9997....888899*********************8875444555************************** PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveeesgslvlgWkdrpLvsvS 371
                     +s+er ++Er+  gr+iv++vac+ +e++er+e++++W +rl+ +GF+p+++s+++ +++++llr++k +g  + +++++ ++l Wkd+p+v++S
  XP_023919483.1 388 TSNERLMLERA-AGRAIVDLVACAPSESIERRESAARWARRLHVSGFSPISFSDEVCDDVRALLRRYK-EGwSMTQCSDAGIFLAWKDQPVVWAS 480
                     ***********.********************************************************.66256668899999************ PP

            GRAS 372 aWr 374
                     aWr
  XP_023919483.1 481 AWR 483
                     **8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    
MDTLFRLVSL QSDQSFNSSR TSSSSRSSRQ NHHNPQEDEE CFNFFMDEED FSSSSSRHYY  60
PYHQQQQPNP STTTTPTLTP TTTTNTNIST PTDFDFNFEF SSNWAPEALL ETAQAIADKN  120
SNRVQQLMWM LNELSSPYGD TDQKLASYFL QALFSRMTDS GERCYRTLAS ASDKTCSFES  180
TRKTVLKFQE VSPWTTFGHV ACNGAILEAL EGEPKLHIVD FSNTYCTQWP TLLEALATRT  240
DETPHLRLTT VVATKSGGVA AVQKVMKEIG NRMEKFARLM GVPFKFNVIH HVGDLSEFNL  300
ASELDIKDDE ALAINCVNTL HSTTTVDNRR DYLISNFRRL QPRIITVVEE EADLDVGVDG  360
VEFVKGFQEC LRWFRVYLEA LEESFSKTSN ERLMLERAAG RAIVDLVACA PSESIERRES  420
AARWARRLHV SGFSPISFSD EVCDDVRALL RRYKEGWSMT QCSDAGIFLA WKDQPVVWAS  480
AWRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein