PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023918629.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 364aa MW: 42050.9 Da PI: 4.2934

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023918629.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.4	6.9e-12	125	209	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++ v +L+e+ + +l+r++l+ +W +v++k+ ++ ++e+ qC+ +++l++rykk+k+ ++ s s+++yf++++ XP_023918629.1 125 WNEHAVFVLLEVWGDSFLKLGRKSLRSEDWNDVAEKVsEASKMEKDELQCRTMLDKLKRRYKKEKAKVEDF-GLSASKWVYFKKMD 209 ***********************************677889*******************99996.788999*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MDDIEDDARY PSKPYSLNPY NPPRRPRNPI RNAPFSHPIS NRYEIEEDDD DDDDENDVEL 60 GEDLDDEDDE NPGGYYRNLE GDGEFVDRHS KKRKLRNSIP EFEFDFASVP RGSRSSKPLY 120 SGADWNEHAV FVLLEVWGDS FLKLGRKSLR SEDWNDVAEK VSEASKMEKD ELQCRTMLDK 180 LKRRYKKEKA KVEDFGLSAS KWVYFKKMDM LMASSPRQEC GLACGIDSGE YVFMNTRVYL 240 ERSNGFDEMR DSPGESENEE EXEEGNGLDE RGRGGVRGCG GGGDGLSYKV LADSIQKFGE 300 IYEKIESSKR QQMMELEKMR LEFQRELELQ KKQILERAQV EIAKMQEEVE DDEDSDASEE 360 NVSE

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MDDIEDDARY PSKPYSLNPY NPPRRPRNPI RNAPFSHPIS NRYEIEEDDD DDDDENDVEL  60
GEDLDDEDDE NPGGYYRNLE GDGEFVDRHS KKRKLRNSIP EFEFDFASVP RGSRSSKPLY  120
SGADWNEHAV FVLLEVWGDS FLKLGRKSLR SEDWNDVAEK VSEASKMEKD ELQCRTMLDK  180
LKRRYKKEKA KVEDFGLSAS KWVYFKKMDM LMASSPRQEC GLACGIDSGE YVFMNTRVYL  240
ERSNGFDEMR DSPGESENEE EXEEGNGLDE RGRGGVRGCG GGGDGLSYKV LADSIQKFGE  300
IYEKIESSKR QQMMELEKMR LEFQRELELQ KKQILERAQV EIAKMQEEVE DDEDSDASEE  360
NVSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	184	DKLKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	5e-82	Trihelix family protein