PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023916920.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

CO-like

Protein Properties

Length: 386aa MW: 42163.7 Da PI: 4.9706

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023916920.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.6	1.9e-06	5	44	6	39
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++e++ +C+++ lC +C + H+ H++ XP_023916920.1 5 CDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalskrHSR 44 *****************************65677777765 PP
2	zf-B_box	25.1	3.6e-08	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C + + lC++C ++H g H++++ XP_023916920.1 46 LLCERCNSQPAVVRCAEEKLSLCQNCDWTGH-GastsassHKRQT 89 57*****************************.5588888898876 PP
3	CCT	62.5	1.3e-21	329	372	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ XP_023916920.1 329 RSDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 372 889**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MGYLCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAVVRC 60 AEEKLSLCQN CDWTGHGAST SASSHKRQTI NCYLGCPSAA ELSSIWSFVL DSPSAGESTC 120 EQEMGLMSLT ENGEKNAWGP SENNMDKSNA WVGSSLAPAP HILDQPAGSS NASLPKLCCP 180 GTKDTELSEE NDLYDDFNMD EVDLNFENYE ELFGVSLSHS EELFENGGID SLFGMKDMSA 240 AEGSSVGHFN STQPACSNAA SADSIVSTKT EPILCFTGRQ GQSNLSFSGL TGESSPGDYQ 300 DCGASSMLLL GEPPWCPPCP ESSYQSGNRS DAVMRYKEKK KTRKFEKRVR YASRKARADV 360 RKRVKGRFVK AGENYDYDPL SQTRSY

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MGYLCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAVVRC  60
AEEKLSLCQN CDWTGHGAST SASSHKRQTI NCYLGCPSAA ELSSIWSFVL DSPSAGESTC  120
EQEMGLMSLT ENGEKNAWGP SENNMDKSNA WVGSSLAPAP HILDQPAGSS NASLPKLCCP  180
GTKDTELSEE NDLYDDFNMD EVDLNFENYE ELFGVSLSHS EELFENGGID SLFGMKDMSA  240
AEGSSVGHFN STQPACSNAA SADSIVSTKT EPILCFTGRQ GQSNLSFSGL TGESSPGDYQ  300
DCGASSMLLL GEPPWCPPCP ESSYQSGNRS DAVMRYKEKK KTRKFEKRVR YASRKARADV  360
RKRVKGRFVK AGENYDYDPL SQTRSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-124	CO-like family protein