PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023915539.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 537aa MW: 58765.4 Da PI: 6.5103

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023915539.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.7	6.8e-16	343	389	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ +Ka++L +A+eY++sLq XP_023915539.1 343 VHNLSERRRRDRINEKMKALQELIPHC-----NETDKASMLDEAIEYLRSLQ 389 6***********************8.....589**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence
MNNNWLPAGW SFESDLPVTN QKKSLGQDND IVELLWKNGQ VVLQSQTRKP SFNHNDSRQV 60 VQKPKLRGSG SYGNSSNLIQ NDDDGDDTVS WVQYPLEVDP FEKEFCYNLF SELPPSDPKE 120 IEQDKLLNKF GASDTDVDAT HVIANSHQPT SISISNSVVP EFPGNLGHHP PRFPFPESAA 180 QKNHDLGGPG KVSNFIGSSN GQHGGEGSGQ LMQGEVRECS VMTIGSSHSG SNQVPNDPDF 240 SNGVGTSALF AGPVKQDVHK ITPQSERRKM DTLEPTVASS SGGSGSSFGR RCTQSTGVNS 300 MKRKVRDAEE LECQSEAAEL ESAAGNKPAQ RSASSRRSRS AEVHNLSERR RRDRINEKMK 360 ALQELIPHCN ETDKASMLDE AIEYLRSLQL QLQVMWMGSG MAPMMFPGVQ RYISLMGMGI 420 GPPPLPSSHN PMHLQRVPPV DQSMSMAPST NHALMCQTPV LNNVNYQNQM HNPSFSEKYA 480 RYMGFHYMQT ASQPLHMLRF GSPTIQQSQT TVPPGTSSGH LNGGAAINDF ASGMNDG

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence

MNNNWLPAGW SFESDLPVTN QKKSLGQDND IVELLWKNGQ VVLQSQTRKP SFNHNDSRQV  60
VQKPKLRGSG SYGNSSNLIQ NDDDGDDTVS WVQYPLEVDP FEKEFCYNLF SELPPSDPKE  120
IEQDKLLNKF GASDTDVDAT HVIANSHQPT SISISNSVVP EFPGNLGHHP PRFPFPESAA  180
QKNHDLGGPG KVSNFIGSSN GQHGGEGSGQ LMQGEVRECS VMTIGSSHSG SNQVPNDPDF  240
SNGVGTSALF AGPVKQDVHK ITPQSERRKM DTLEPTVASS SGGSGSSFGR RCTQSTGVNS  300
MKRKVRDAEE LECQSEAAEL ESAAGNKPAQ RSASSRRSRS AEVHNLSERR RRDRINEKMK  360
ALQELIPHCN ETDKASMLDE AIEYLRSLQL QLQVMWMGSG MAPMMFPGVQ RYISLMGMGI  420
GPPPLPSSHN PMHLQRVPPV DQSMSMAPST NHALMCQTPV LNNVNYQNQM HNPSFSEKYA  480
RYMGFHYMQT ASQPLHMLRF GSPTIQQSQT TVPPGTSSGH LNGGAAINDF ASGMNDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	348	353	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	2e-64	bHLH family protein