PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023914708.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 574aa MW: 63228.4 Da PI: 9.5111

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023914708.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.6	1.7e-06	424	446	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 lC+ ++ G+C GdrC++ H XP_023914708.1 424 QLCNSYHLIGFCEKGDRCTYDHR 446 59********************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MSFETSLQRS DSSQLVLDGL GSDSSHSRGD GTPPSTQDYT RLQGDYERLE CELEEARDAR 60 DRYKQMVKGK AEDSFVLVLI DADGYIFHDT LVQNGTKGGE QAAELLQQIV TSWLAEDGLD 120 HCAVKVQAYG NVRGLSTAMH HARDSGSKER SFTSFAAGFT QFNGLCDFVD SGRRELGTQF 180 KVLSTFLHHI KQASCRHIYF AGCHNAKYST NLAAHLIFGA PVTLIDTSSM HPSFVKLGLP 240 LKELSSLFQG APRQVAQDLT PKAKTFADLL AMPVKKISDR PSSVKPFVVL PDGCSESKSN 300 HNSSSASLSQ PPKQGGISNV NVSQQKSGVM TSHKEPQHRR PKVPNQLTTN AAEDHKTARH 360 GVQKPKFTNA GLTNGDLESI LMSEKRATRG LVALNPGGHR LDPFLPPPEK QSSADFIRRH 420 SAKQLCNSYH LIGFCEKGDR CTYDHRPISL GVHNMLMRKS RSKPCRRGGA CRMLYCMAGH 480 ICQFSNCQYR GGNVRCKMGP GYHFRDQNLK TAQYVRGEIR ERKGSHDTAS MSSNAGTRSP 540 TPSTSQESEA GKPKQRVVKM PQQEPRETPP LIAL

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MSFETSLQRS DSSQLVLDGL GSDSSHSRGD GTPPSTQDYT RLQGDYERLE CELEEARDAR  60
DRYKQMVKGK AEDSFVLVLI DADGYIFHDT LVQNGTKGGE QAAELLQQIV TSWLAEDGLD  120
HCAVKVQAYG NVRGLSTAMH HARDSGSKER SFTSFAAGFT QFNGLCDFVD SGRRELGTQF  180
KVLSTFLHHI KQASCRHIYF AGCHNAKYST NLAAHLIFGA PVTLIDTSSM HPSFVKLGLP  240
LKELSSLFQG APRQVAQDLT PKAKTFADLL AMPVKKISDR PSSVKPFVVL PDGCSESKSN  300
HNSSSASLSQ PPKQGGISNV NVSQQKSGVM TSHKEPQHRR PKVPNQLTTN AAEDHKTARH  360
GVQKPKFTNA GLTNGDLESI LMSEKRATRG LVALNPGGHR LDPFLPPPEK QSSADFIRRH  420
SAKQLCNSYH LIGFCEKGDR CTYDHRPISL GVHNMLMRKS RSKPCRRGGA CRMLYCMAGH  480
ICQFSNCQYR GGNVRCKMGP GYHFRDQNLK TAQYVRGEIR ERKGSHDTAS MSSNAGTRSP  540
TPSTSQESEA GKPKQRVVKM PQQEPRETPP LIAL