PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023913351.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 481aa MW: 55281.1 Da PI: 6.3639

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023913351.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.2	5.2e-24	110	209	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+ +v++Li a+ +++++ + + +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ ++ XP_023913351.1 110 KWTDTMVRLLIMAVYYIGDEAGPEGtdqnakkkssgllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQSL 204 7************98888885322445677888999******************************************559*****9 PP trihelix 82 fdqle 86 ++ ++ XP_023913351.1 205 LETMD 209 99997 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MFSNIGSGML GLELPVHQHQ QQQKQQQQQQ QNPTNTQNSH HLNHHTQMLS YPHNNDPDHH 60 PPQQSLKFPF AQKAKQPISL SDEEDPAGFG ADDNNSGDAK RKNSPWQRMK WTDTMVRLLI 120 MAVYYIGDEA GPEGTDQNAK KKSSGLLQKK GKWKSVSRAM MEKGFYVSPQ QCEDKFNDLN 180 KRYKRVNDIL GKGTACRVVE NQSLLETMDL TPKMKEEVRK LLNSKHLFFR EMCAYHNSCG 240 HGVVNQSAEV ATEPSNSHVQ NQQAQQQRCF HSSENAVGGA NMSEGSKMVK GGSGEEDEED 300 DEDEDDSDED EDEDEDEEDQ GGSRGHSGHG VLHEDEDDNE ERCSSRNKRA RKGVFSNGSA 360 QLMQQLRCEL VSMVQDGAKS PWDKKQWMRT RLMQLEEQQV MYQCQAFELE KQRLKWVKFS 420 SKKEREMDRA KLENERRRLQ NERMVLLVRQ KEIELLDLQH QHHHQQQHSS NKRGDPSSIT 480 G

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MFSNIGSGML GLELPVHQHQ QQQKQQQQQQ QNPTNTQNSH HLNHHTQMLS YPHNNDPDHH  60
PPQQSLKFPF AQKAKQPISL SDEEDPAGFG ADDNNSGDAK RKNSPWQRMK WTDTMVRLLI  120
MAVYYIGDEA GPEGTDQNAK KKSSGLLQKK GKWKSVSRAM MEKGFYVSPQ QCEDKFNDLN  180
KRYKRVNDIL GKGTACRVVE NQSLLETMDL TPKMKEEVRK LLNSKHLFFR EMCAYHNSCG  240
HGVVNQSAEV ATEPSNSHVQ NQQAQQQRCF HSSENAVGGA NMSEGSKMVK GGSGEEDEED  300
DEDEDDSDED EDEDEDEEDQ GGSRGHSGHG VLHEDEDDNE ERCSSRNKRA RKGVFSNGSA  360
QLMQQLRCEL VSMVQDGAKS PWDKKQWMRT RLMQLEEQQV MYQCQAFELE KQRLKWVKFS  420
SKKEREMDRA KLENERRRLQ NERMVLLVRQ KEIELLDLQH QHHHQQQHSS NKRGDPSSIT  480
G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	3e-74	Trihelix family protein