PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023912926.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 502aa MW: 56053.5 Da PI: 9.0337

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023912926.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023912926.1 75 FVCEICNKGFQRDQNLQLHRRGH 97 89*******************88 PP
2	zf-C2H2	12.2	0.00057	151	173	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_023912926.1 151 WKCEKCSKIYAVQSDWKAHSKTC 173 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MFPAAMSNST SLSEEASVSS GTRVQDFGGL NPMVSTISPP QTQKIKKKRS LPGNPDPDAE 60 VIALSPKTLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNSKE IRKRAYVCPE 120 PSCVHHHPSR ALGDLTGIKK HYCRKHGEKK WKCEKCSKIY AVQSDWKAHS KTCGTREYRC 180 DCGTLFSRKD SFITHRAFCD ALAEESARLS VNQLATGNTN PTIVQSLFSF QTQQHFTNPP 240 QTHMSLHPWD PPAPQQNPNP NSININNNNP SQNPLLLQQI KPEEQLEPHH FHIPQTYFHN 300 HHHHKALINS PFQTLSNPAT SAHLSATALL QKAATVGLAS TANAAQQGQS VGHMISSAEF 360 GTPSHHHHHH HQIQMDPVVS HMISSSSNDQ YNIADQFTSR NLATWHKTDR LTRDFLGLTD 420 IAGNGNVTTN TTATNTTSTG HGHGHVNVSI NVKNMLSYTD GVGFPHQQQQ QHYNERDHTS 480 MLNMKSQGFG LADPSSETWR DC

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MFPAAMSNST SLSEEASVSS GTRVQDFGGL NPMVSTISPP QTQKIKKKRS LPGNPDPDAE  60
VIALSPKTLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNSKE IRKRAYVCPE  120
PSCVHHHPSR ALGDLTGIKK HYCRKHGEKK WKCEKCSKIY AVQSDWKAHS KTCGTREYRC  180
DCGTLFSRKD SFITHRAFCD ALAEESARLS VNQLATGNTN PTIVQSLFSF QTQQHFTNPP  240
QTHMSLHPWD PPAPQQNPNP NSININNNNP SQNPLLLQQI KPEEQLEPHH FHIPQTYFHN  300
HHHHKALINS PFQTLSNPAT SAHLSATALL QKAATVGLAS TANAAQQGQS VGHMISSAEF  360
GTPSHHHHHH HQIQMDPVVS HMISSSSNDQ YNIADQFTSR NLATWHKTDR LTRDFLGLTD  420
IAGNGNVTTN TTATNTTSTG HGHGHVNVSI NVKNMLSYTD GVGFPHQQQQ QHYNERDHTS  480
MLNMKSQGFG LADPSSETWR DC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-115	C2H2 family protein