PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023912863.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

TCP

Protein Properties

Length: 485aa MW: 52888.8 Da PI: 8.2557

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023912863.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.6	1.1e-38	87	241	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssaseceaes 77 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a ai el+++ + XP_023912863.1 87 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAATDAISELPSLkspfpdtpkqlsdekrasgG----------- 170 689***********************************************************77666555554444444332........... PP TCP 78 ssssas...................nsssgkaaksaakskksqksaasalnlak.esrakarararertrekmrik 133 + n+s++ + +++a+s+ s++s+ s l+l++ esr +ar+rarer +ek + + XP_023912863.1 171 -----AeqafdsadleldgdpnfqqNQSQHLSLSKSACSSTSETSKGSGLSLSRsESRVRARERARERAKEKENES 241 .....1122222222222223332244444777788899999999999*********************98865 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MEVDGIQQGQ PCKFPRVGNG RNDSTKLASK VISEHYPDDE EDGDQLKRLS TTTGGPVGSE 60 TAVANANTNR LRGWHHSSRI IRVSRASGGK DRHSKVWTSK GLRDRRVRLS VTTAIQFYDL 120 QDRLGYDQPS KAVEWLIKAA TDAISELPSL KSPFPDTPKQ LSDEKRASGG AEQAFDSADL 180 ELDGDPNFQQ NQSQHLSLSK SACSSTSETS KGSGLSLSRS ESRVRARERA RERAKEKENE 240 SRIAHNVNHI SHNTSSFTEL LTGAAAANHS PTGSAHQNPG GDQSNLFHKP ARQWAASGPM 300 DYFDSSLLGP SSSSRTHHSS GFPGQIHLGN SLPHAMSVFS NVSGDNNHPE LQQQHFPFNV 360 PEHLIPVGAA TSQQQQPGGS DYNLNFTISS GLAGYNRGTL QSNSPSLLPH HLQRYPAIDG 420 PNLPFFMTSV AASAVAAPPM ENHHHNHNHN HHHHHHQFSP GIDGRLQLCY SDGTRHSDHK 480 GKGKN

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MEVDGIQQGQ PCKFPRVGNG RNDSTKLASK VISEHYPDDE EDGDQLKRLS TTTGGPVGSE  60
TAVANANTNR LRGWHHSSRI IRVSRASGGK DRHSKVWTSK GLRDRRVRLS VTTAIQFYDL  120
QDRLGYDQPS KAVEWLIKAA TDAISELPSL KSPFPDTPKQ LSDEKRASGG AEQAFDSADL  180
ELDGDPNFQQ NQSQHLSLSK SACSSTSETS KGSGLSLSRS ESRVRARERA RERAKEKENE  240
SRIAHNVNHI SHNTSSFTEL LTGAAAANHS PTGSAHQNPG GDQSNLFHKP ARQWAASGPM  300
DYFDSSLLGP SSSSRTHHSS GFPGQIHLGN SLPHAMSVFS NVSGDNNHPE LQQQHFPFNV  360
PEHLIPVGAA TSQQQQPGGS DYNLNFTISS GLAGYNRGTL QSNSPSLLPH HLQRYPAIDG  420
PNLPFFMTSV AASAVAAPPM ENHHHNHNHN HHHHHHQFSP GIDGRLQLCY SDGTRHSDHK  480
GKGKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	233	RVRARERARER
2	223	235	RVRARERARERAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	1e-42	TCP family protein