PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023911605.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 167aa    MW: 18813.4 Da    PI: 9.5595
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023911605.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.15.2e-37101091100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aC++Ck++r+kC ++C lapyfpa++ ++f+n+h+lFG+sn+lk+++a+++++r+++++s+++e++ar +d v+G++g+i++l++q+e  +++l+
  XP_023911605.1  10 ACSSCKHQRKKCDQNCELAPYFPASRYHEFQNAHRLFGVSNILKIMNAVEPSQRQATAESILMEGNARRNDTVNGCLGIINNLKSQVEFYEKQLN 104
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                      ++++
  XP_023911605.1 105 IVNQH 109
                     99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MNREGGNPSA CSSCKHQRKK CDQNCELAPY FPASRYHEFQ NAHRLFGVSN ILKIMNAVEP  60
SQRQATAESI LMEGNARRND TVNGCLGIIN NLKSQVEFYE KQLNIVNQHL AIYRGREKLK  120
QQNQKLENLA NTSSFASKPP LAPAPVQHDQ IDGFKLLSPI LPNLVRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.15e-37LBD family protein