PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023909933.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 832aa MW: 93124.5 Da PI: 6.0536

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023909933.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	36	58	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C++ Fsr+++ rH r+H XP_023909933.1 36 YKCQFCSRAFSRSEHRSRHERSH 58 9********************99 PP
2	zf-C2H2	11.2	0.0011	64	85	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 +kC +C +F r+++L rH rt XP_023909933.1 64 FKCMKCRSTFVRRDLLLRHDRT 85 89*****************665 PP

Sequence ? help Back to Top
Protein Sequence Length: 832 aa Download sequence
MSTVATAVTS GSPVSPTTTR KASGAGGEKT EKEKRYKCQF CSRAFSRSEH RSRHERSHTK 60 ERPFKCMKCR STFVRRDLLL RHDRTVHAKD GGVPLQSDSK RRNTSGSKAS PSGPPVTNKL 120 PELDDASIEQ FGDGNEMFGV EQAAMLMANF HQKAADMSGQ ESDTINPEPL ITSDGPQLLE 180 PSLPYPGSMT LPQMQGWDTM LPQNVSQPKP SSITSSLDQN HDLGLPYPSN HSITSGSNTL 240 PPLMERSQSQ QDGLPSFTSS GMMGGMGTPG ALSPFPSMMG PVSPVDYRRS PGPPQQCTMA 300 KSPQIGGEED VARIMDNIRH CDSEGALVDT FRLPQIAILN RYMTTYFNYF HHHLPFLHPA 360 SFNPATVPAP LLLSVLSIGA LYTFEQDQAY MLHIGSKVLV TQFLQKKDNF SSRKCPLWMM 420 QSSLLNMSFA SWSGDPKGLE WACSIKSLLA NMVAGNRYEL KLRTEARDGR QPCHDEWIED 480 EGCRRTYYAV YIFFGLLTLT YNHTPAISFN EFDTLELPSS ETLWNLESTD NESWIESLTA 540 STIITFREAH DTLFQGKDAR YSAFATRVMI NALFLEVWYH KRSPEALQDV VTEYKLRLAL 600 ASWESSLQLC EPETLVVQLS VPHKGHPLIF NAMAMYRNTR ARLSVDLKSI QEALRYHDSY 660 EVAAAMTHAR DSVRRDEEML NVIKYCFECI EVAALQGIRW VARTSATNWS IEHPLCGLDL 720 IVILSLWLWR VEHDEEPASD DEKAMYQKLR NLFDDDSVDG FGQKLSSTVA RLWGSMIDEV 780 VVWGITKLMG ESFKLHAQAL IGTDFEDTMV TEPTNDTAVA NMAPHVAEVA AY

Sequence ? help Back to Top

Protein Sequence Length: 832 aa Download sequence

MSTVATAVTS GSPVSPTTTR KASGAGGEKT EKEKRYKCQF CSRAFSRSEH RSRHERSHTK  60
ERPFKCMKCR STFVRRDLLL RHDRTVHAKD GGVPLQSDSK RRNTSGSKAS PSGPPVTNKL  120
PELDDASIEQ FGDGNEMFGV EQAAMLMANF HQKAADMSGQ ESDTINPEPL ITSDGPQLLE  180
PSLPYPGSMT LPQMQGWDTM LPQNVSQPKP SSITSSLDQN HDLGLPYPSN HSITSGSNTL  240
PPLMERSQSQ QDGLPSFTSS GMMGGMGTPG ALSPFPSMMG PVSPVDYRRS PGPPQQCTMA  300
KSPQIGGEED VARIMDNIRH CDSEGALVDT FRLPQIAILN RYMTTYFNYF HHHLPFLHPA  360
SFNPATVPAP LLLSVLSIGA LYTFEQDQAY MLHIGSKVLV TQFLQKKDNF SSRKCPLWMM  420
QSSLLNMSFA SWSGDPKGLE WACSIKSLLA NMVAGNRYEL KLRTEARDGR QPCHDEWIED  480
EGCRRTYYAV YIFFGLLTLT YNHTPAISFN EFDTLELPSS ETLWNLESTD NESWIESLTA  540
STIITFREAH DTLFQGKDAR YSAFATRVMI NALFLEVWYH KRSPEALQDV VTEYKLRLAL  600
ASWESSLQLC EPETLVVQLS VPHKGHPLIF NAMAMYRNTR ARLSVDLKSI QEALRYHDSY  660
EVAAAMTHAR DSVRRDEEML NVIKYCFECI EVAALQGIRW VARTSATNWS IEHPLCGLDL  720
IVILSLWLWR VEHDEEPASD DEKAMYQKLR NLFDDDSVDG FGQKLSSTVA RLWGSMIDEV  780
VVWGITKLMG ESFKLHAQAL IGTDFEDTMV TEPTNDTAVA NMAPHVAEVA AY