PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023909856.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 548aa MW: 61984 Da PI: 6.7252

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023909856.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	146	164	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +Cp C F r +L++H+ XP_023909856.1 146 TCPGCRAYFIRAAMLVQHL 164 7*****************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MPIMKGSAMD NGELPPVKCT YPQCHQHFAT EKDMKKHKQD NPEHSYCRKC NMDCEDWEAL 60 LQHKIDAMSP WLEGKMMQYA RDTAAAEDDK NNLPAPKHIV CEFCGADFKS FGGRKRHRAQ 120 VSSRDPWRMM FTDSPFQEHA ANQSITCPGC RAYFIRAAML VQHLEDGRCS VVTRHEFLGS 180 IRQKHFLKAI FKAPDEYLAA LEVNKALPLG IEVGLEAMSL SIENLRMDDH HREVPLLLDQ 240 DDATQGKGYV PMIPSKLEAD LIDFNEDTSS AEGTGYHGSY SRVNDEKWPR LPGMPPAALP 300 NRTLSTIVSS STTSVNEGSE AEDGTITSRR GGVKVQAGSY ASRGSEAMVD PGPDTVPRSV 360 TFDTKKKTNA WCDGRLSQKL TEQNVQALPK ANSAHWSSYT RHRRDTVEDH KHGNILYSHW 420 WDPSSEDYSI DRFLAYVEVP KLDSRTGRTM IDLKTNKPII ESIIWKYCCP DPDCKARFEN 480 SEDFETHWIY GHGQLQWRCP CCLKLFRSVA SLVGHCESNS KCGVKYSDQF QMVSECSWLE 540 SGSRLILL

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MPIMKGSAMD NGELPPVKCT YPQCHQHFAT EKDMKKHKQD NPEHSYCRKC NMDCEDWEAL  60
LQHKIDAMSP WLEGKMMQYA RDTAAAEDDK NNLPAPKHIV CEFCGADFKS FGGRKRHRAQ  120
VSSRDPWRMM FTDSPFQEHA ANQSITCPGC RAYFIRAAML VQHLEDGRCS VVTRHEFLGS  180
IRQKHFLKAI FKAPDEYLAA LEVNKALPLG IEVGLEAMSL SIENLRMDDH HREVPLLLDQ  240
DDATQGKGYV PMIPSKLEAD LIDFNEDTSS AEGTGYHGSY SRVNDEKWPR LPGMPPAALP  300
NRTLSTIVSS STTSVNEGSE AEDGTITSRR GGVKVQAGSY ASRGSEAMVD PGPDTVPRSV  360
TFDTKKKTNA WCDGRLSQKL TEQNVQALPK ANSAHWSSYT RHRRDTVEDH KHGNILYSHW  420
WDPSSEDYSI DRFLAYVEVP KLDSRTGRTM IDLKTNKPII ESIIWKYCCP DPDCKARFEN  480
SEDFETHWIY GHGQLQWRCP CCLKLFRSVA SLVGHCESNS KCGVKYSDQF QMVSECSWLE  540
SGSRLILL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	119	GRKRHRA