PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023909382.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 648aa MW: 73901 Da PI: 8.7821

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023909382.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.2	3.9e-08	460	501	2	40
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W++eE ell ++ +++++g +W+ +++++g+gR+ +++ XP_023909382.1 460 KPWSKEEIELLRKGMQKYPKGtsrRWDVVSEYIGTGRSVEEI 501 69***********************************99876 PP
2	Myb_DNA-binding	30.5	8.4e-10	591	637	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 W++ ++ lv+a k ++++ +W+++a+ ++ g+t +qck ++ ++ XP_023909382.1 591 VWSAVQEKALVQALKTFPKEtnqRWERVAAAVP-GKTVNQCKKKFTSL 637 7******************************.*******99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence
MAVCKNFQLI AYSQEIVDGQ PIYVSSNCLP SKALRYEPAG HAFHAAALKL RGYEEEDADV 60 DDKKVVDDKE QMYLPSSDSY SSKGKKKSGD GAKQQDHYAL LGLSHVRYLA TEDQIKKSYR 120 EAALRFHPDK QAALLLAEET ETAKQSKKDE IENHFKSIQE AYEVLIDPVK RRIYDSTDEF 180 DDDIPTDCAP QDFFKVFGPA FLRNGRWSVS QPIPTLGDDN TPLKEVDNFY NFWYTFKSWR 240 EFPHADEFDL EQAESRDHKR WMERQNAKLA EKARKEEHVR IRSLVDNAYK RDPRILKRKE 300 VEKAEKQRKR EAKYLAKKLQ EEEAARIAEE ERRRKEEEEK RAAEAASLQK KAKEKEKKLL 360 RKERTRLRTS SGSVVSQHLL DLSGDDVESL CMSLDIEQLR SLCNRMERTE GLEQAKVLRD 420 ALGYNSDSKG KKVDEHPPQQ NGSVVANGNV PLSSFEKKEK PWSKEEIELL RKGMQKYPKG 480 TSRRWDVVSE YIGTGRSVEE ILKATKTVLL QKPDTAKAFD SFLEKRKPAP SIASPLTTRE 540 EIEGVSTTQV SQSSSASKID NPEGSPTRST NDQNPSDSSA ANGVSSPEHD VWSAVQEKAL 600 VQALKTFPKE TNQRWERVAA AVPGKTVNQC KKKFTSLKES FRNKKTAV

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence

MAVCKNFQLI AYSQEIVDGQ PIYVSSNCLP SKALRYEPAG HAFHAAALKL RGYEEEDADV  60
DDKKVVDDKE QMYLPSSDSY SSKGKKKSGD GAKQQDHYAL LGLSHVRYLA TEDQIKKSYR  120
EAALRFHPDK QAALLLAEET ETAKQSKKDE IENHFKSIQE AYEVLIDPVK RRIYDSTDEF  180
DDDIPTDCAP QDFFKVFGPA FLRNGRWSVS QPIPTLGDDN TPLKEVDNFY NFWYTFKSWR  240
EFPHADEFDL EQAESRDHKR WMERQNAKLA EKARKEEHVR IRSLVDNAYK RDPRILKRKE  300
VEKAEKQRKR EAKYLAKKLQ EEEAARIAEE ERRRKEEEEK RAAEAASLQK KAKEKEKKLL  360
RKERTRLRTS SGSVVSQHLL DLSGDDVESL CMSLDIEQLR SLCNRMERTE GLEQAKVLRD  420
ALGYNSDSKG KKVDEHPPQQ NGSVVANGNV PLSSFEKKEK PWSKEEIELL RKGMQKYPKG  480
TSRRWDVVSE YIGTGRSVEE ILKATKTVLL QKPDTAKAFD SFLEKRKPAP SIASPLTTRE  540
EIEGVSTTQV SQSSSASKID NPEGSPTRST NDQNPSDSSA ANGVSSPEHD VWSAVQEKAL  600
VQALKTFPKE TNQRWERVAA AVPGKTVNQC KKKFTSLKES FRNKKTAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	0.0	MYB family protein