PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023909068.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB_related

Protein Properties

Length: 1016aa MW: 110988 Da PI: 4.4144

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023909068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.7	2.3e-12	871	914	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rW++++ el+++av+q+G++ ++ I + ++ gRt+ q+k+++ k XP_023909068.1 871 RTRWSKQDTELFYEAVRQFGTD-FSMIQQLFP-GRTRHQVKLKFKK 914 78******************.*****.********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1016 aa Download sequence
MDSFDDILGE PAANRAQAGA KFRPKAKPRP RKETPAVVHP TISSNTKEDT AILPITDVGT 60 LESIRPADVD NKLNNEFGSS IANSAENFTK NNEGSFSGVP NLDDTTKLIL VNPSSQVVAT 120 SEDVVSIDAL PKGVAVTDIN GDWHFSFRQS ETEADFVGLD VDPSADISPE PVTLTSAGSD 180 LKTSVQALDI ADDGLKDPFT LSFSTPEIVG TKVPSNECSI SDDLHSEAAI LDGNGKLHPN 240 NKKLAEEVDS LGLDLDPFED NLHGHVTNKS RGGGKFKPKA EICPRNETST SLPSAPSNAT 300 EEKPVTLSST SLETEQYAQP VAENKLTNED GLSAVTLQIV GTREPSKDNE CSFPDKRSSE 360 SIKSSSQLVT GEDAGSRDAL QSEVAMCDSN SVWHSSIGML SSEVDCMGFE LEPFGDNEGE 420 GSLFHSETST LLASNNKDTE ENFGIPACSS VDSSALKVCD AAEPHTCSDP HMAPDPVTCG 480 EDAFSNQYGD FQIENGRLET EEAGTFSGME TLDFMSEANI ASGRQTGKFR PKPKMKTGKE 540 KHSTAISHPQ SESVLHLQGP QLVTSETGYM ASVPAFSADC VQDDSMRFGE FIPSDPASVI 600 MMNEELRNLA ETSHSGGPIL GDILHSEDVP EIRVEVNANI GKGAASNLPQ KQKQSATAGE 660 ENDGGKSSRK LRKRVAFQLI DEQDDGANDD FSAEPPTNSS IDEDEDENNN DEHKVESKSQ 720 KKRAPRKSKK PEAENGKPVR KRKKANEAAD QSTEKPPKKF SHSTRRNRRC VDKALLETPE 780 DEIDPQRLPI KDLILLAEHK ERLASKEAAA LKTPLTNLSS SNSFHEEDPY NGEEAFASEQ 840 GRGSDDDEPN YEVPISDRLI NYQSYMDKTP RTRWSKQDTE LFYEAVRQFG TDFSMIQQLF 900 PGRTRHQVKL KFKKEERQYP FRLSEALASR SKDHSHFQLV IERLQQASQA EEHSNREDSV 960 GLTGEEGVEG LETETNEAAK PEEDEEVVIK DQEADFAEVH SPVKSYASDD GPDDWI

Sequence ? help Back to Top

Protein Sequence Length: 1016 aa Download sequence

MDSFDDILGE PAANRAQAGA KFRPKAKPRP RKETPAVVHP TISSNTKEDT AILPITDVGT  60
LESIRPADVD NKLNNEFGSS IANSAENFTK NNEGSFSGVP NLDDTTKLIL VNPSSQVVAT  120
SEDVVSIDAL PKGVAVTDIN GDWHFSFRQS ETEADFVGLD VDPSADISPE PVTLTSAGSD  180
LKTSVQALDI ADDGLKDPFT LSFSTPEIVG TKVPSNECSI SDDLHSEAAI LDGNGKLHPN  240
NKKLAEEVDS LGLDLDPFED NLHGHVTNKS RGGGKFKPKA EICPRNETST SLPSAPSNAT  300
EEKPVTLSST SLETEQYAQP VAENKLTNED GLSAVTLQIV GTREPSKDNE CSFPDKRSSE  360
SIKSSSQLVT GEDAGSRDAL QSEVAMCDSN SVWHSSIGML SSEVDCMGFE LEPFGDNEGE  420
GSLFHSETST LLASNNKDTE ENFGIPACSS VDSSALKVCD AAEPHTCSDP HMAPDPVTCG  480
EDAFSNQYGD FQIENGRLET EEAGTFSGME TLDFMSEANI ASGRQTGKFR PKPKMKTGKE  540
KHSTAISHPQ SESVLHLQGP QLVTSETGYM ASVPAFSADC VQDDSMRFGE FIPSDPASVI  600
MMNEELRNLA ETSHSGGPIL GDILHSEDVP EIRVEVNANI GKGAASNLPQ KQKQSATAGE  660
ENDGGKSSRK LRKRVAFQLI DEQDDGANDD FSAEPPTNSS IDEDEDENNN DEHKVESKSQ  720
KKRAPRKSKK PEAENGKPVR KRKKANEAAD QSTEKPPKKF SHSTRRNRRC VDKALLETPE  780
DEIDPQRLPI KDLILLAEHK ERLASKEAAA LKTPLTNLSS SNSFHEEDPY NGEEAFASEQ  840
GRGSDDDEPN YEVPISDRLI NYQSYMDKTP RTRWSKQDTE LFYEAVRQFG TDFSMIQQLF  900
PGRTRHQVKL KFKKEERQYP FRLSEALASR SKDHSHFQLV IERLQQASQA EEHSNREDSV  960
GLTGEEGVEG LETETNEAAK PEEDEEVVIK DQEADFAEVH SPVKSYASDD GPDDWI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	721	743	KKRAPRKSKKPEAENGKPVRKRK
2	737	743	KPVRKRK
3	740	744	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	8e-53	MYB_related family protein