PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023909067.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB_related

Protein Properties

Length: 1018aa MW: 111263 Da PI: 4.4144

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023909067.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.7	2.3e-12	873	916	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rW++++ el+++av+q+G++ ++ I + ++ gRt+ q+k+++ k XP_023909067.1 873 RTRWSKQDTELFYEAVRQFGTD-FSMIQQLFP-GRTRHQVKLKFKK 916 78******************.*****.********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1018 aa Download sequence
MDSFDDILGE PAANRAQAGA KFRPKAKPRP RKETPAVVHP TISSNTKEDT AILPITDVGT 60 LESIRPADVD NKLNNEFGSS IANSAENFTK NNEGSFSGVP NLDDTTKLIL VNPSSQVVAT 120 SEDVVSIDAL PKGVAVTDIN GDWHFSFRQS ETEADFVGLD VDPSADISPE PVTLTSAGSD 180 LKTSVQALDI ADDGLKDPFT LSFSTPEIVG TKVPSNECSI SDDLHSEAAI LDGNGKLHPN 240 NKKLAEEVDS LGLDLDPFED NLHGHVTNKS RGGGKFKPKA EICPRNETST SLPSAPSNAT 300 EEKPVTLSST SLETEQYAQP VAENKLTNED GLSAVTLQIV GTREPSKDNE CSFPDKRSSE 360 SIKSSSQLVT GEDAGSRDAL QSEVAMCDSN SVWHSSIGML SSEVDCMGFE LEPFGDNEGE 420 GSLFHSETST LLASNNKDTE ENFGIPACSS VDSSALKVCD AAEPHTCSDP HMAPDPVTCG 480 EDAFSNQYGD FQIENGRLET EFQEAGTFSG METLDFMSEA NIASGRQTGK FRPKPKMKTG 540 KEKHSTAISH PQSESVLHLQ GPQLVTSETG YMASVPAFSA DCVQDDSMRF GEFIPSDPAS 600 VIMMNEELRN LAETSHSGGP ILGDILHSED VPEIRVEVNA NIGKGAASNL PQKQKQSATA 660 GEENDGGKSS RKLRKRVAFQ LIDEQDDGAN DDFSAEPPTN SSIDEDEDEN NNDEHKVESK 720 SQKKRAPRKS KKPEAENGKP VRKRKKANEA ADQSTEKPPK KFSHSTRRNR RCVDKALLET 780 PEDEIDPQRL PIKDLILLAE HKERLASKEA AALKTPLTNL SSSNSFHEED PYNGEEAFAS 840 EQGRGSDDDE PNYEVPISDR LINYQSYMDK TPRTRWSKQD TELFYEAVRQ FGTDFSMIQQ 900 LFPGRTRHQV KLKFKKEERQ YPFRLSEALA SRSKDHSHFQ LVIERLQQAS QAEEHSNRED 960 SVGLTGEEGV EGLETETNEA AKPEEDEEVV IKDQEADFAE VHSPVKSYAS DDGPDDWI

Sequence ? help Back to Top

Protein Sequence Length: 1018 aa Download sequence

MDSFDDILGE PAANRAQAGA KFRPKAKPRP RKETPAVVHP TISSNTKEDT AILPITDVGT  60
LESIRPADVD NKLNNEFGSS IANSAENFTK NNEGSFSGVP NLDDTTKLIL VNPSSQVVAT  120
SEDVVSIDAL PKGVAVTDIN GDWHFSFRQS ETEADFVGLD VDPSADISPE PVTLTSAGSD  180
LKTSVQALDI ADDGLKDPFT LSFSTPEIVG TKVPSNECSI SDDLHSEAAI LDGNGKLHPN  240
NKKLAEEVDS LGLDLDPFED NLHGHVTNKS RGGGKFKPKA EICPRNETST SLPSAPSNAT  300
EEKPVTLSST SLETEQYAQP VAENKLTNED GLSAVTLQIV GTREPSKDNE CSFPDKRSSE  360
SIKSSSQLVT GEDAGSRDAL QSEVAMCDSN SVWHSSIGML SSEVDCMGFE LEPFGDNEGE  420
GSLFHSETST LLASNNKDTE ENFGIPACSS VDSSALKVCD AAEPHTCSDP HMAPDPVTCG  480
EDAFSNQYGD FQIENGRLET EFQEAGTFSG METLDFMSEA NIASGRQTGK FRPKPKMKTG  540
KEKHSTAISH PQSESVLHLQ GPQLVTSETG YMASVPAFSA DCVQDDSMRF GEFIPSDPAS  600
VIMMNEELRN LAETSHSGGP ILGDILHSED VPEIRVEVNA NIGKGAASNL PQKQKQSATA  660
GEENDGGKSS RKLRKRVAFQ LIDEQDDGAN DDFSAEPPTN SSIDEDEDEN NNDEHKVESK  720
SQKKRAPRKS KKPEAENGKP VRKRKKANEA ADQSTEKPPK KFSHSTRRNR RCVDKALLET  780
PEDEIDPQRL PIKDLILLAE HKERLASKEA AALKTPLTNL SSSNSFHEED PYNGEEAFAS  840
EQGRGSDDDE PNYEVPISDR LINYQSYMDK TPRTRWSKQD TELFYEAVRQ FGTDFSMIQQ  900
LFPGRTRHQV KLKFKKEERQ YPFRLSEALA SRSKDHSHFQ LVIERLQQAS QAEEHSNRED  960
SVGLTGEEGV EGLETETNEA AKPEEDEEVV IKDQEADFAE VHSPVKSYAS DDGPDDWI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	723	745	KKRAPRKSKKPEAENGKPVRKRK
2	739	745	KPVRKRK
3	742	746	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	7e-53	MYB_related family protein