PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023908024.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 343aa MW: 38128.3 Da PI: 7.3712

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023908024.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.8	2.2e-09	174	221	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_023908024.1 174 SHSLAERLRREKISERMKILQRLVPGC----DKVTGKALMLDEIINYVQSLQ 221 8***********************9....555***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MAAFSYLQNS FILDSNFLST NIKMSSFVED ENLNTNGLSQ FYPPELVQEI PVDVTVQESS 60 CLEHSSKVAF SDNEPSVTKK QSTDSSIVVD KLDSGEQVTQ KVPPMEKKRK SRNKAPLTFT 120 QSKNPTEGVM KKQKKCNGTL KEEGKKPKAA KKVAEEPPTG YIHVRARRGQ ATDSHSLAER 180 LRREKISERM KILQRLVPGC DKVTGKALML DEIINYVQSL QNQVEFLSMK LASVNPMFYD 240 FGMDLDGLML RPEGLSSMAS IPPSMTQCSP AQPTGFADLT TTTVFTTANN YPIVDSSGST 300 LFQHGQRPNA LSEDIANAFC DVEDQRQKLL NPSGFFNNLC FFP

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MAAFSYLQNS FILDSNFLST NIKMSSFVED ENLNTNGLSQ FYPPELVQEI PVDVTVQESS  60
CLEHSSKVAF SDNEPSVTKK QSTDSSIVVD KLDSGEQVTQ KVPPMEKKRK SRNKAPLTFT  120
QSKNPTEGVM KKQKKCNGTL KEEGKKPKAA KKVAEEPPTG YIHVRARRGQ ATDSHSLAER  180
LRREKISERM KILQRLVPGC DKVTGKALML DEIINYVQSL QNQVEFLSMK LASVNPMFYD  240
FGMDLDGLML RPEGLSSMAS IPPSMTQCSP AQPTGFADLT TTTVFTTANN YPIVDSSGST  300
LFQHGQRPNA LSEDIANAFC DVEDQRQKLL NPSGFFNNLC FFP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	134	KKRKSRNKAPLTFTQSKNPTEGVMKKQK
2	107	148	KKRKSRNKAPLTFTQSKNPTEGVMKKQKKCNGTLKEEGKKPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	5e-58	bHLH family protein