PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023907578.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 444aa MW: 47915.6 Da PI: 8.4548

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023907578.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.8	5.7e-11	53	77	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + ++C +++rtG+C yG+rC+++H+ XP_023907578.1 53 GVPNCVYYMRTGFCGYGSRCRYNHP 77 6899********************8 PP
2	zf-CCCH	34.7	2.9e-11	97	123	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++tGtCk+ ++CkF+H++ XP_023907578.1 97 PGEPACQYYLKTGTCKFAASCKFHHPK 123 57899********************96 PP
3	zf-CCCH	36.3	9.5e-12	144	169	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ XP_023907578.1 144 GEKECSYYLKTGHCKFGLTCKFHHPQ 169 7899********************97 PP
4	zf-CCCH	36.9	5.9e-12	300	326	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG+Ck+G++C+++H++ XP_023907578.1 300 PGEPQCQYYMRTGECKFGSSCRYHHPR 326 57899********************96 PP
5	zf-CCCH	31.4	3.3e-10	345	370	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +t C f++++G+Ck+G++CkF H++ XP_023907578.1 345 GTQHCAFYMQNGHCKFGSTCKFDHPM 370 6777********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MELYGRNSAR NGPQSGQQQQ QPEWTPSGTE TGLEESMWHL GLRGSESYPE RQGVPNCVYY 60 MRTGFCGYGS RCRYNHPHDR AAVAEAVRAT GEYPERPGEP ACQYYLKTGT CKFAASCKFH 120 HPKDGGGSLS QAPPNIYGYP LRPGEKECSY YLKTGHCKFG LTCKFHHPQP AGTSMPASAP 180 QFYPPVQSPS LPTPDQYGGA STSLRVPRPP LMPSSYVQGT YGPLLLPPGV VPIQSWNPYS 240 APLSPVLSPG AQPAVGPTPL YGVTPLSSST PALARPYSSF PSSADPSSSN QNQQSFPERP 300 GEPQCQYYMR TGECKFGSSC RYHHPRDRVV PSTVLGPSGL PLRPGTQHCA FYMQNGHCKF 360 GSTCKFDHPM EAYSPSASSL IDIPIAPYTV GSLLATVAPS SSSSELRPEL ISVSLSEVQH 420 SSQISSPLSG GRSARQGGEV RRSS

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MELYGRNSAR NGPQSGQQQQ QPEWTPSGTE TGLEESMWHL GLRGSESYPE RQGVPNCVYY  60
MRTGFCGYGS RCRYNHPHDR AAVAEAVRAT GEYPERPGEP ACQYYLKTGT CKFAASCKFH  120
HPKDGGGSLS QAPPNIYGYP LRPGEKECSY YLKTGHCKFG LTCKFHHPQP AGTSMPASAP  180
QFYPPVQSPS LPTPDQYGGA STSLRVPRPP LMPSSYVQGT YGPLLLPPGV VPIQSWNPYS  240
APLSPVLSPG AQPAVGPTPL YGVTPLSSST PALARPYSSF PSSADPSSSN QNQQSFPERP  300
GEPQCQYYMR TGECKFGSSC RYHHPRDRVV PSTVLGPSGL PLRPGTQHCA FYMQNGHCKF  360
GSTCKFDHPM EAYSPSASSL IDIPIAPYTV GSLLATVAPS SSSSELRPEL ISVSLSEVQH  420
SSQISSPLSG GRSARQGGEV RRSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-170	C3H family protein