PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023907392.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 452aa MW: 51237.3 Da PI: 5.4052

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023907392.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.2	1.6e-21	120	216	1	85
trihelix 1 rWtkqevlaLiearremeerlr..rgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt++ v++Li+++ ++++ g+ +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ d XP_023907392.1 120 KWTDNVVRLLIAVVACVGDDGTleGGEghkrksgslQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPALMD 214 7************555544421111334445566********************************************6699999998888 PP trihelix 84 ql 85 ++ XP_023907392.1 215 SM 216 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MDSSGLGGGF LSGPNGAILD LESSIHRHQQ TQLGHPLLRH QNQVNVMSGL ECDHHPIGLM 60 EEKSSILKGI SMNFSKGKAV APINISSCNN MSEEDEPSFA EDGNGDNDGG KRGSPWQRMK 120 WTDNVVRLLI AVVACVGDDG TLEGGEGHKR KSGSLQKKGK WKTVSKIMIS KGCHVSPQQC 180 EDKFNDLNKR YKRLNDILGR GTSCRVVENP ALMDSMPHLT AKAKEDVRKI LSSKHLFYKE 240 MCAYHNGQRI PNCQDLDLQG HSLPLGSCSK DNNGSDKEEA EENNDSDDDE MDNEDDINAE 300 GDGERMGEFS GRAKVSEEEG HFWSQSVELD SFEAEMAGIF QDPTKSLWER REWIKRQMLQ 360 LQEQKVSFQA HALELEKQHF KWLRYCSKKD WELERLRLEN ERMKLENERM VLLLREKELE 420 IDFRRSEASI DPTSVGIDRL QGRDQIDLGR HE

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MDSSGLGGGF LSGPNGAILD LESSIHRHQQ TQLGHPLLRH QNQVNVMSGL ECDHHPIGLM  60
EEKSSILKGI SMNFSKGKAV APINISSCNN MSEEDEPSFA EDGNGDNDGG KRGSPWQRMK  120
WTDNVVRLLI AVVACVGDDG TLEGGEGHKR KSGSLQKKGK WKTVSKIMIS KGCHVSPQQC  180
EDKFNDLNKR YKRLNDILGR GTSCRVVENP ALMDSMPHLT AKAKEDVRKI LSSKHLFYKE  240
MCAYHNGQRI PNCQDLDLQG HSLPLGSCSK DNNGSDKEEA EENNDSDDDE MDNEDDINAE  300
GDGERMGEFS GRAKVSEEEG HFWSQSVELD SFEAEMAGIF QDPTKSLWER REWIKRQMLQ  360
LQEQKVSFQA HALELEKQHF KWLRYCSKKD WELERLRLEN ERMKLENERM VLLLREKELE  420
IDFRRSEASI DPTSVGIDRL QGRDQIDLGR HE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-75	Trihelix family protein