PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023907245.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

TCP

Protein Properties

Length: 371aa MW: 40886.9 Da PI: 6.897

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023907245.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.5	6.9e-36	57	170	3	93
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec...eaesssssasns 85 g+kdrhsk++T++g+RdRR Rl a++a++f+d+qd+LGfd++sk+i+WL+++ak+ai +l+ s +sa + e++ + ++++s XP_023907245.1 57 GRKDRHSKVCTAKGPRDRRLRLAAHTAIQFYDVQDRLGFDRPSKAIDWLMEKAKAAIEALATAnssslpnqnS-TSA--MnsaEQACLNLQQHHS 148 89***********************************************************996655544321.111..1211222223333322 PP TCP 86 ssg..............kaaks 93 +s+ +++++ XP_023907245.1 149 ESEtimglnsgfgyqnqQHSNE 170 2225655544444333222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MQGHYDQYVQ QQSQPNRAPH GRTRNTHLAR APKERSKSTK GGEVVEVNGG HIAQAIGRKD 60 RHSKVCTAKG PRDRRLRLAA HTAIQFYDVQ DRLGFDRPSK AIDWLMEKAK AAIEALATAN 120 SSSLPNQNST SAMNSAEQAC LNLQQHHSES ETIMGLNSGF GYQNQQHSNE NSINSLSFIS 180 EAANANVYKS SPSIQFHDHF PPELNSRTII HTQDLCLSLQ SFQDPVLDND PSHVSPINFT 240 EQAANSASAG LSDLSATDIE IGWFQRTMMS WNSDTSCHGG GEDFVFNSLP PQQSALLCQN 300 QLLSHRGPLQ SNNLLSVSAW TNPPIPPISI NSAHHNRSAL SSQTSPRFQI EEQEYNATSE 360 RSSSTCSPCH Y

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MQGHYDQYVQ QQSQPNRAPH GRTRNTHLAR APKERSKSTK GGEVVEVNGG HIAQAIGRKD  60
RHSKVCTAKG PRDRRLRLAA HTAIQFYDVQ DRLGFDRPSK AIDWLMEKAK AAIEALATAN  120
SSSLPNQNST SAMNSAEQAC LNLQQHHSES ETIMGLNSGF GYQNQQHSNE NSINSLSFIS  180
EAANANVYKS SPSIQFHDHF PPELNSRTII HTQDLCLSLQ SFQDPVLDND PSHVSPINFT  240
EQAANSASAG LSDLSATDIE IGWFQRTMMS WNSDTSCHGG GEDFVFNSLP PQQSALLCQN  300
QLLSHRGPLQ SNNLLSVSAW TNPPIPPISI NSAHHNRSAL SSQTSPRFQI EEQEYNATSE  360
RSSSTCSPCH Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	9e-46	TCP family protein