PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023906601.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25868.1 Da    PI: 6.5276
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023906601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.73.5e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+eyss
  XP_023906601.1  9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSS 59
                    68***********************************************96 PP
2K-box53.21.3e-18921711998
           K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ++++L kei +  +++R++ Ge+L+ L+++eLqqLe+ Le++l+++ ++K e ++++i++lq+k  +l een++Lr+++
  XP_023906601.1  92 SNHSRLSKEITEKSHQLRQMRGEELQGLNVEELQQLERSLESGLSRVIERKGEKIMREINDLQRKGMQLMEENERLRQQV 171
                     568999******9*****************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEYSSS  60
SMKEILERHN LHSKNLEKLD QPSLELQLVE NSNHSRLSKE ITEKSHQLRQ MRGEELQGLN  120
VEELQQLERS LESGLSRVIE RKGEKIMREI NDLQRKGMQL MEENERLRQQ VVDISNGRRH  180
IGTESENLIA EEGQSSESVT NVCNSTGAPH DYDSSDTSLK LGLPYSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-114MIKC_MADS family protein