PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023906528.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

AP2

Protein Properties

Length: 506aa MW: 55934.6 Da PI: 6.328

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023906528.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.6	1.7e-14	222	281	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g XP_023906528.1 222 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 281 57*****************666664478446******99***********98 PP
2	AP2	50.5	5e-16	324	375	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_023906528.1 324 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 375 57**************988532...5***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MGPSTNWLSF SLSPMEMLRS SESQFMSYEN SSTDSPHYLI DNFYTNGWAN QNEVKEGEAQ 60 NLGDSSFLTS LIDPQIQNQQ VIPKLEDFLG DSSSMVRYSD SQTETQDSSL TQIYDRGSAY 120 FNEPQDLKTI TGFQAFSTNS GSEVDDSASI ARTQLACAEF GGQSIESAGT ELGFSNCANV 180 TGGALSLGVT QTQTQSSEQK PIVSVESDGT KKIADTFGQR TSIYRGVTRH RWTGRYEAHL 240 WDNSCRREGQ ARKGRQVYLG GYDKEDKAAR AYDLAALKYW GPTATTNFPV SNYTKELEEM 300 KHVTKQEFIA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE 360 EAAEAYDIAA IKFRGANAVT NFEMNRYDVE AIAKSSLPIG GAAKRLKLSL ESEQKPVITH 420 NQQPQSSSGS NSSINFAAIQ SLPAIPCGIP MDASTAALYH HNLFQHFQSN NIITTSNSPG 480 SSSIATPMNI YHHPQAEYFL WPHQPY

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MGPSTNWLSF SLSPMEMLRS SESQFMSYEN SSTDSPHYLI DNFYTNGWAN QNEVKEGEAQ  60
NLGDSSFLTS LIDPQIQNQQ VIPKLEDFLG DSSSMVRYSD SQTETQDSSL TQIYDRGSAY  120
FNEPQDLKTI TGFQAFSTNS GSEVDDSASI ARTQLACAEF GGQSIESAGT ELGFSNCANV  180
TGGALSLGVT QTQTQSSEQK PIVSVESDGT KKIADTFGQR TSIYRGVTRH RWTGRYEAHL  240
WDNSCRREGQ ARKGRQVYLG GYDKEDKAAR AYDLAALKYW GPTATTNFPV SNYTKELEEM  300
KHVTKQEFIA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE  360
EAAEAYDIAA IKFRGANAVT NFEMNRYDVE AIAKSSLPIG GAAKRLKLSL ESEQKPVITH  420
NQQPQSSSGS NSSINFAAIQ SLPAIPCGIP MDASTAALYH HNLFQHFQSN NIITTSNSPG  480
SSSIATPMNI YHHPQAEYFL WPHQPY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	0.0	AP2 family protein