PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023905806.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

AP2

Protein Properties

Length: 475aa MW: 52279 Da PI: 8.6142

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023905806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.7	5.3e-17	161	210	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_023905806.1 161 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 210 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MLDLNVDILS NKSVCNEKDT VMELVKLPED SGTSTSSIVN AEEAPTNAGD EDSSNNSSSE 60 FMFDILKRKE KYSVHNTNEV KQNTPSSELV TRTLFPVTGE RESRESEFIL GSSSSSLSST 120 KTQWLNLSFA NSGSGQPELR IMQQKQQQAR KSRRGPRSRS SQYRGVTFYR RTGRWESHIW 180 DCGKQVYLGG FDTAHAAARA YDRAAIKFRG IDADINYSVS DYEDDMKQTR NMTKEEFIHT 240 LRRQSTGIAR GSSKYRGVTL HKCGRWEARM GQFLGKKAYD MAAIKCNGRE AVTNFEPSTY 300 EGEIIVDGNT QGNGHNLDLS LGISNGSKGK DNVGDCLSRC NRERLMADNS ASAPLAGQPA 360 HSLTMTSKHL PIWSGICPGY LQSYEGMATE KTVEAVSSQR LSSWGWQMQG NGIVAPVPLF 420 SIAASSGFSS STSTAPSATF PSNPQINSVQ NPLLPLPTTS ASNTNISNYF TYRRS

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MLDLNVDILS NKSVCNEKDT VMELVKLPED SGTSTSSIVN AEEAPTNAGD EDSSNNSSSE  60
FMFDILKRKE KYSVHNTNEV KQNTPSSELV TRTLFPVTGE RESRESEFIL GSSSSSLSST  120
KTQWLNLSFA NSGSGQPELR IMQQKQQQAR KSRRGPRSRS SQYRGVTFYR RTGRWESHIW  180
DCGKQVYLGG FDTAHAAARA YDRAAIKFRG IDADINYSVS DYEDDMKQTR NMTKEEFIHT  240
LRRQSTGIAR GSSKYRGVTL HKCGRWEARM GQFLGKKAYD MAAIKCNGRE AVTNFEPSTY  300
EGEIIVDGNT QGNGHNLDLS LGISNGSKGK DNVGDCLSRC NRERLMADNS ASAPLAGQPA  360
HSLTMTSKHL PIWSGICPGY LQSYEGMATE KTVEAVSSQR LSSWGWQMQG NGIVAPVPLF  420
SIAASSGFSS STSTAPSATF PSNPQINSVQ NPLLPLPTTS ASNTNISNYF TYRRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	6e-96	AP2 family protein