PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023904779.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 893aa MW: 105951 Da PI: 7.0845

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023904779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.2e-06	232	251	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H XP_023904779.1 232 CPFHLKTGACRFGQRCSRVH 251 ******************99 PP
2	zf-CCCH	24.5	4.6e-08	411	438	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ XP_023904779.1 411 WKVAICGEYMKSRfkTCSHGTACNFIHC 438 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 893 aa Download sequence
MAEPLAGKED EEEERDMMEE VEEETEGMSE RLRRKEKRKA KKKMKRKQMR KEMAEKEREE 60 EEARLNDPEE QRKLRMMEEE EKERMERDRK EFEEREKAWI EAMERKKKEE EEEEEEERRK 120 KALEEDSRRQ QQAENENELI EDDDWEYVEG PAEIIWKGNE IIVKKKRVKV PKKDAHQQRI 180 DNADRPTSNP LPPQSEAFAD YKNAPKLSAE QIIENVTQQV PNFGTEQDKA HCPFHLKTGA 240 CRFGQRCSRV HFYPDKSCTL LIRNMYNGPG LAWEQDEGLE VCKRCLHVIL YWSSLLVMAI 300 TLRGLKMQAT ILVCGYIWHF LVLKMKRRKS HTDEEVEGCY EEFYEDVHTE FLKFGEIVNF 360 KVCRNGAFHL RGNVYVQYKS LDSAVLVYNS INGRYFAGKQ ISCEFVNVTR WKVAICGEYM 420 KSRFKTCSHG TACNFIHCFR NPGGDYEWAD FDKPPPRYWV RKMASLFGYS DEVGYQKEVE 480 QENLGQLRHS RKRLTDVDRY YSRSKSKEID YLNGGGSSRR NDNKNDMQKS TQRRGRTSND 540 RKQMEVLDED MRGEKTNFKG GSYRKSRSHD TDSEGEWSDR YKDRYYGSAR KSSRLRNRDV 600 NHRTHEVESE GGYSDRSEDR ETHDGHARKS SRHSRNAKFV DDCEDQEKFG GNWSDRDGDQ 660 ETHDAYMTKS SRHRRKVGHP DDRMDSKNRT HDTDGEWSDG ERDRDRHHRK RSESSRHLRK 720 VGHSDDHKDS KNRSHDPEGE WSDRDTNRDR HHHKKRKSSR RDHDHGGSKN RADDTNLISD 780 WLDSDGERHK SQTRKHTRHR NEALDYSDDE GEPAKKLKDK FHSRESSIEK SGLERGSMHS 840 HSRWDSINEN LESDGSRESN SSDQYVQRHK LHDLESSYNS DKYIDKQDRW EPD

Sequence ? help Back to Top

Protein Sequence Length: 893 aa Download sequence

MAEPLAGKED EEEERDMMEE VEEETEGMSE RLRRKEKRKA KKKMKRKQMR KEMAEKEREE  60
EEARLNDPEE QRKLRMMEEE EKERMERDRK EFEEREKAWI EAMERKKKEE EEEEEEERRK  120
KALEEDSRRQ QQAENENELI EDDDWEYVEG PAEIIWKGNE IIVKKKRVKV PKKDAHQQRI  180
DNADRPTSNP LPPQSEAFAD YKNAPKLSAE QIIENVTQQV PNFGTEQDKA HCPFHLKTGA  240
CRFGQRCSRV HFYPDKSCTL LIRNMYNGPG LAWEQDEGLE VCKRCLHVIL YWSSLLVMAI  300
TLRGLKMQAT ILVCGYIWHF LVLKMKRRKS HTDEEVEGCY EEFYEDVHTE FLKFGEIVNF  360
KVCRNGAFHL RGNVYVQYKS LDSAVLVYNS INGRYFAGKQ ISCEFVNVTR WKVAICGEYM  420
KSRFKTCSHG TACNFIHCFR NPGGDYEWAD FDKPPPRYWV RKMASLFGYS DEVGYQKEVE  480
QENLGQLRHS RKRLTDVDRY YSRSKSKEID YLNGGGSSRR NDNKNDMQKS TQRRGRTSND  540
RKQMEVLDED MRGEKTNFKG GSYRKSRSHD TDSEGEWSDR YKDRYYGSAR KSSRLRNRDV  600
NHRTHEVESE GGYSDRSEDR ETHDGHARKS SRHSRNAKFV DDCEDQEKFG GNWSDRDGDQ  660
ETHDAYMTKS SRHRRKVGHP DDRMDSKNRT HDTDGEWSDG ERDRDRHHRK RSESSRHLRK  720
VGHSDDHKDS KNRSHDPEGE WSDRDTNRDR HHHKKRKSSR RDHDHGGSKN RADDTNLISD  780
WLDSDGERHK SQTRKHTRHR NEALDYSDDE GEPAKKLKDK FHSRESSIEK SGLERGSMHS  840
HSRWDSINEN LESDGSRESN SSDQYVQRHK LHDLESSYNS DKYIDKQDRW EPD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	39	RRKEKRK
2	33	47	RRKEKRKAKKKMKRK
3	34	42	RKEKRKAKK
4	38	46	RKEKRKAKK
5	41	48	KKKMKRKQ
6	105	121	RKKKEEEEEEEEERRKK
7	106	122	RKKKEEEEEEEEERRKK
8	326	331	KRRKSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-141	C3H family protein