PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023904623.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Whirly

Protein Properties

Length: 242aa MW: 26780.9 Da PI: 10.2239

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023904623.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	188.1	1.5e-58	63	199	1	137
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 svyk+kaal+v +v+ptf++ldsg+l+++r+G +++++ +a++ rkyd ek+q fals+tev+++++l++k+sceffhdp++ +sn+G+vrk+l XP_023904623.1 63 SVYKGKAALSVTPVLPTFTKLDSGSLVVDRRGVMMMKFLPAIGDRKYDNEKRQMFALSPTEVGSMISLGPKDSCEFFHDPSMLSSNAGQVRKSLT 157 79******************************************************************************************* PP Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 ++ ++dG+G++++l+v n+++k++e f+vPv+ aefav++++ XP_023904623.1 158 IKAHADGTGYLISLNVVNNILKTKEFFTVPVTTAEFAVMKTA 199 **************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MMKLARLLPF RSQLSEKLLY GKAGDVKDAS RLYAFTSRAG ISNARENSAA KGYIADRIFA 60 PYSVYKGKAA LSVTPVLPTF TKLDSGSLVV DRRGVMMMKF LPAIGDRKYD NEKRQMFALS 120 PTEVGSMISL GPKDSCEFFH DPSMLSSNAG QVRKSLTIKA HADGTGYLIS LNVVNNILKT 180 KEFFTVPVTT AEFAVMKTAC SFALPHILGW DRLTNHPSRD SRRTVGLPSK VDPQFLDSEW 240 DK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	2e-94	Whirly family protein