PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023904381.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 779aa    MW: 87753.4 Da    PI: 4.79
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023904381.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.54.1e-1094047761373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+avs+gd + a++lL++++++++p gd  qRla++f+++L+arla+  +++  ++  ++++  ++ e+l+a+++   ++P+ ++s+
  XP_023904381.1 404 LRSLLILCAQAVSTGDGRTANELLKQVRQHSTPFGDGSQRLAHFFANGLEARLAG--TSVGTQMFYTSNRVLSTLEKLKAYQVHLSACPFKRISY 496
                     6899***************************************************..555555655555556799******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                        N++I  a+e+e+++Hi+Df+i++G+QWp L+q L++Rpeg+p+lRiTg++ p++g   +e +eetg+rL+k++++++vpfe+n+++++++e+
  XP_023904381.1 497 SFSNKMIFHAAEKETTLHIVDFGIQYGFQWPLLIQFLSKRPEGAPKLRITGIDLPQPGfrPAECIEETGRRLEKYCKRFNVPFEYNAIASQNWET 591
                     *********************************************************9*99***************************999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++eeL+++++E+laVn+++++++llde+v+ +s+rd+vL+l+++++P++++ +  + ++n++ Fl+rf eal ++sal+d +++++pr++ +r 
  XP_023904381.1 592 IQIEELKIERNEVLAVNCAFRMKTLLDETVEGTSPRDAVLNLIRRMKPDIFINSIVNGSYNAPFFLTRFREALFHFSALYDVFDVTIPRDNPQRL 686
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + Ere+ gre++nvvaceg er+er et++k + r+++aGFk +pl++++++  ++ ++  + + + ++e+++++++gWk+r +++ S+W
  XP_023904381.1 687 MFEREFYGREAMNVVACEGLERVERPETYKKSQVRISRAGFKLLPLNQEIVSLFRTKMKAWYHKDFILDEDNHWMLQGWKGRIVYASSCW 776
                     **************************************************************888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    
MDSNSDFVNG FSAVSPNSED QFSNLIDEYT FNQLSPLPTT DLNFLEGPNL LSDVDLGPTG  60
FEPSITTTDG PEGQPYDPPH VVMPPMLQAD STTSPDDNDF SETVFKYMNQ ILMEENIENK  120
PCMFYDPLGL KDTEKSFYDA LGKQNPPLPN QNSGESSGLS SSSGDYGTNS ASSSSTVNDA  180
LWLNDLGEHN YRPSLSPPPM LGEYNAVQSN FNPTDQSQFF GNLSDDSVNH FGDGLEAMAQ  240
NIFTNSESLL QFRRGLEEAS KFLPKSDNLV IDLESNKVSS SEWKGEDLKV ESLVVKGEKE  300
SDSSDRLIGR KNREREEIEL EEGRSNKQTA VYVEESEETE LSEMLDKVLL CIGAPASLYG  360
DNCEPLQNDA NKALPQTKGQ AQGGNGGKRS RNKKQGKKKE TVDLRSLLIL CAQAVSTGDG  420
RTANELLKQV RQHSTPFGDG SQRLAHFFAN GLEARLAGTS VGTQMFYTSN RVLSTLEKLK  480
AYQVHLSACP FKRISYSFSN KMIFHAAEKE TTLHIVDFGI QYGFQWPLLI QFLSKRPEGA  540
PKLRITGIDL PQPGFRPAEC IEETGRRLEK YCKRFNVPFE YNAIASQNWE TIQIEELKIE  600
RNEVLAVNCA FRMKTLLDET VEGTSPRDAV LNLIRRMKPD IFINSIVNGS YNAPFFLTRF  660
REALFHFSAL YDVFDVTIPR DNPQRLMFER EFYGREAMNV VACEGLERVE RPETYKKSQV  720
RISRAGFKLL PLNQEIVSLF RTKMKAWYHK DFILDEDNHW MLQGWKGRIV YASSCWVPV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein