PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023904352.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 762aa    MW: 86233.5 Da    PI: 6.3003
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023904352.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.67.9e-1163907592373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L+ c +avss+d + a ++L+++++++sp gd +qRla+yf+  ++arl+++++++y al+p++ts    ++ l+a+++++ ++P++k++ +
  XP_023904352.1 390 RTRLVLCSQAVSSDDRRTAFEVLKQVRQHSSPFGDGLQRLAHYFVDSIEARLTGTGTQIYTALAPKKTS---AADMLKAYQAYVSACPFMKLAII 481
                     67899***************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN++Il+a e++ ++H+iDf+i +G+QWpaL++ L+ Rp+gpp+lRiTg++ p+ g   +e++++tg+rLak++e+++vpfe+n+ +a+++e++
  XP_023904352.1 482 FANHMILRASENAATLHVIDFGILYGFQWPALIHCLSRRPGGPPKLRITGIELPQRGfrPAERVQQTGRRLAKYCERFNVPFEYNA-IAQKWETI 575
                     *******************************************************99*****************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++++L+++++E+laVn+ ++ ++llde+v ++++rd+vL+l+k+++P+++v++  +  +n++ F++rf eal ++s+lfd+l+++++re+  r +
  XP_023904352.1 576 QFQDLKINRDEVLAVNCLYRFKNLLDETVVVNNPRDAVLNLIKKINPNIFVHAIVNGFYNAPFFVTRFREALFHFSSLFDMLDTNIAREDPMRLM 670
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      E+e++gre+ nv+aceg er+er et+++W+ r ++aGF+++p++ +++k+ ++ l+  + + + v+ + +++++gWk+r L++ S+W
  XP_023904352.1 671 FEKEFFGREAINVIACEGLERVERPETYKQWQLRKMRAGFRQLPMDREIMKKLRAKLKGGYHNDFVVDVDGHWMLQGWKGRILYASSCW 759
                     ***********************************************************99888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    
MFMDPQQPQF FGSNNGFKFD IESLFLNSDQ YPVVENGIIF NSPTLGPSFM DNPVFSPDPS  60
PGNSAQLSLE GDSPADDSDF SDSVLKYISQ VLMEEEMESK PCMFHDPLAL QATEKSLYEV  120
IGGKYPTSPD QHPLYIDQNV GSPDDSFLSG FSDYSSNSSS SFGNSNLNDF QWNHADFGEY  180
KPALLKNPLP TDFVFQSTAK SSPPSSFNFP NSLTSDGNGL LGSSVNELLV QNFLSNTESV  240
LQFQRGVEEA NKFLPKGNQL TVELEKNTFS PVLNKKAPEV LVKLEIDERE HSPSRLRGRK  300
NHEREDTDLE DGRSNKQSAV YPDESEISEM FDKVLLCGGP KREPSVCNFD ESLQNGENKN  360
LLQNGQSNVS SGAKIRAKKQ SNKKDIVDLR TRLVLCSQAV SSDDRRTAFE VLKQVRQHSS  420
PFGDGLQRLA HYFVDSIEAR LTGTGTQIYT ALAPKKTSAA DMLKAYQAYV SACPFMKLAI  480
IFANHMILRA SENAATLHVI DFGILYGFQW PALIHCLSRR PGGPPKLRIT GIELPQRGFR  540
PAERVQQTGR RLAKYCERFN VPFEYNAIAQ KWETIQFQDL KINRDEVLAV NCLYRFKNLL  600
DETVVVNNPR DAVLNLIKKI NPNIFVHAIV NGFYNAPFFV TRFREALFHF SSLFDMLDTN  660
IAREDPMRLM FEKEFFGREA INVIACEGLE RVERPETYKQ WQLRKMRAGF RQLPMDREIM  720
KKLRAKLKGG YHNDFVVDVD GHWMLQGWKG RILYASSCWI PA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein