PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023904342.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 769aa    MW: 86203.6 Da    PI: 5.0259
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023904342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3642.1e-1113977661373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+avs+gd + a++lL++++++++p gd  qR+a++f+++L+arla+  +++ +++  ++ s     e+l+a++++  ++P+ k+s+
  XP_023904342.1 397 LRSLLILCAQAVSAGDGRTANELLKQVRQHSTPFGDGSQRVAHFFANGLEARLAG--TSIGSQMVYKRVS---ALEKLKAYQVYLSACPFKKISY 486
                     6899**************************************************9..8999999888888...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +  N++Il a+e+++++Hi+Df+i++G+QWp L+q L++Rpeg+p+lRiTg++ p++g   +e +eetg+rL+k++++++vpfe+n+++++++e+
  XP_023904342.1 487 VFSNKMILHAAEEATTLHIVDFGIQYGFQWPLLIQLLSKRPEGAPKLRITGIDLPQPGfrPAECIEETGRRLEKYCNRFNVPFEYNAIASQNWET 581
                     *********************************************************9*99***************************999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++eeL+++++E+laVn++++l++llde+v+ +s+rd+vL+l+++++P++++ +  + ++n++ Fl+rf eal ++sal+d ++++lpr++ +r 
  XP_023904342.1 582 IRIEELKIERNEVLAVNCAFRLKNLLDETVEGTSPRDAVLNLIRRMKPDIFINSTVNGSYNAPFFLTRFREALFHFSALYDVFDVTLPRDNPQRL 676
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     k Ere++gre++nvvaceg er+er et+++ + r+++aGFk++pl+++ ++ +++ ++  + + + ++++s+++++gWk+r  ++ S+W
  XP_023904342.1 677 KFEREFFGREAMNVVACEGLERVERPETYKQSQVRISRAGFKQLPLNQELMSVIRAKIKARYHKDFILDDDSHWMLQGWKGRIFYASSCW 766
                     ***********************************************************999888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    
MDSSFDFVNG FSTMSPNSED QFSNLINGHT FNQLSPPPTT DLNFLESPNL SSDLDLGPTG  60
FETSITTTVG PEGQPHVVVP PMLQADFTSS PDDSDFSETV LKYINQILME ENIENKPCMF  120
YDPLGLKDTE KSFYDALGKK NPPLPNQNSV ESPLFSSSSG DYGTNSTSSS STVNDSLWQS  180
DLGEHNYQPS LSPPPVLGEH NAIQSNFNPT DQSQFFGNLP TGSVNHFGDG LEVMAQNFFT  240
NSESILQFRR GLEEASKFLP KSNNLVIDLE SNMVSSSEWK GEDLKVESLV VKGEKESDSP  300
DGSRGRKNRE REETELEEGR SNKQTAVYVE EDELSDMFDK VLLCTDAPAS MCGENCEPLQ  360
NDASKASLHT TGQAQGANSG KGSRNKKQSK KKETVDLRSL LILCAQAVSA GDGRTANELL  420
KQVRQHSTPF GDGSQRVAHF FANGLEARLA GTSIGSQMVY KRVSALEKLK AYQVYLSACP  480
FKKISYVFSN KMILHAAEEA TTLHIVDFGI QYGFQWPLLI QLLSKRPEGA PKLRITGIDL  540
PQPGFRPAEC IEETGRRLEK YCNRFNVPFE YNAIASQNWE TIRIEELKIE RNEVLAVNCA  600
FRLKNLLDET VEGTSPRDAV LNLIRRMKPD IFINSTVNGS YNAPFFLTRF REALFHFSAL  660
YDVFDVTLPR DNPQRLKFER EFFGREAMNV VACEGLERVE RPETYKQSQV RISRAGFKQL  720
PLNQELMSVI RAKIKARYHK DFILDDDSHW MLQGWKGRIF YASSCWVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein