PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023904328.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

LBD

Protein Properties

Length: 311aa MW: 34363.4 Da PI: 7.1671

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023904328.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.3	2.6e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l XP_023904328.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNAAQREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQTDLY 101 7********************************************************************************************99 PP DUF260 96 llkee 100 +k+e XP_023904328.1 102 NAKKE 106 98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELNAAQR 60 EDAVNSLAYE AEARLRDPVY GCVGLISILQ HRLKQVQTDL YNAKKELATY IGPQAMLPIL 120 QPPGYIPQQH HPGNPSSSGV ALPYNMSPAM MGIPTGGATH SGQMMIRETQ QQQQQQQQHH 180 QHQIYEAQQL AAAVAAREQQ EIYRNYEQQQ QPELVRFNTG FDPAGAGSVT ASGYNQMNAA 240 AMSPSLALGT YETPYQIQTQ QGAEHHHPHH QLQAQLLLQP QQTQAQQQGQ QTQPQQPKSE 300 SEEGRSVGPS C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	9e-88	LBD family protein