PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023903809.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family RAV
Protein Properties Length: 334aa    MW: 37708.7 Da    PI: 9.3836
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023903809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-1555104156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     s+ykGV   + +grW A+I+d      ++r++lg+f+ +e+Aaka++ a+++++g+
  XP_023903809.1  55 SKYKGVVPQP-NGRWGAQIYDK-----HQRVWLGTFDEEEQAAKAYDIAALRFRGH 104
                     89****9888.8*********3.....5**************************97 PP
2B395.34.1e-30188290199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kv tpsdv+k++rlv+pk+ ae++     ++ ++++ l +ed+ g++W+++++y+ +s++yvltkGW++Fvk+++Lk+gD v F+++   +++
  XP_023903809.1 188 FEKVVTPSDVGKLNRLVIPKQQAEKCfplpTESAAKGVLLNFEDSIGKVWRFRYCYWSSSQSYVLTKGWSKFVKEKNLKAGDRVSFQRSMGPDKK 282
                     99*************************9996667899**************************************************98668888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     ++++++ +
  XP_023903809.1 283 FFIGWRPR 290
                     89999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MAMNCLDEST SGSITSSSFT VKRSMENSCQ MGSGSSAKSN SEIGIEADSK KLPSSKYKGV  60
VPQPNGRWGA QIYDKHQRVW LGTFDEEEQA AKAYDIAALR FRGHNAITNL QHTLEPHKDA  120
NELYFLNSHS KDEIVDMLRK HSYTHELGQS EYNICASHGT KKRHRDNWLM DTPVSESELL  180
DVAKEYLFEK VVTPSDVGKL NRLVIPKQQA EKCFPLPTES AAKGVLLNFE DSIGKVWRFR  240
YCYWSSSQSY VLTKGWSKFV KEKNLKAGDR VSFQRSMGPD KKFFIGWRPR NGSSFVEVLD  300
KVKLSATIQA VKVVRLFGVN ILETPTSSFV TNNI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-120RAV family protein