PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023903398.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 432aa MW: 47913.2 Da PI: 8.4742

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023903398.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	360	405	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k + a++L +AveYIk+Lq XP_023903398.1 360 SIAERVRRTRISERMRKLQELFPNM----DKQTNTADMLDLAVEYIKDLQ 405 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MCKFKQQSPG ESIMSLLYSP TFKYSDVKLK KNHLDFMDSN TYHHPQQQQQ QQQQQHQQQQ 60 HQQQHQHNSG LMRYRSAPSS LLANLVDGSI NGGGGGVGCE DYRDLRSSNP EVETMLAFMT 120 SSNSSGDSNS QMVYQAQAAQ QVQALPNHNS VGAGTTLDSS FSGLNSVGLE NSMQAKMGAG 180 NRSNLVRQSS LPPGLFSDLT IDNGFAVMRD VGTFRACNDT NGEASPSMTK LNDQLSFSAR 240 RLPQIAEIGN EITSPEDQSL GNANGSNQQY IPKFTSDSWD ESAFNSLRRA RDNEGNMFPT 300 SNALETQNAD SGNQTHRLTH HLSLPKTSVE MAAIEKFLQF QGSVPCKIRA KRGCATHPRS 360 IAERVRRTRI SERMRKLQEL FPNMDKQTNT ADMLDLAVEY IKDLQKQVKT LTDTKAKCSC 420 SSKQKQYSNH SA

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MCKFKQQSPG ESIMSLLYSP TFKYSDVKLK KNHLDFMDSN TYHHPQQQQQ QQQQQHQQQQ  60
HQQQHQHNSG LMRYRSAPSS LLANLVDGSI NGGGGGVGCE DYRDLRSSNP EVETMLAFMT  120
SSNSSGDSNS QMVYQAQAAQ QVQALPNHNS VGAGTTLDSS FSGLNSVGLE NSMQAKMGAG  180
NRSNLVRQSS LPPGLFSDLT IDNGFAVMRD VGTFRACNDT NGEASPSMTK LNDQLSFSAR  240
RLPQIAEIGN EITSPEDQSL GNANGSNQQY IPKFTSDSWD ESAFNSLRRA RDNEGNMFPT  300
SNALETQNAD SGNQTHRLTH HLSLPKTSVE MAAIEKFLQF QGSVPCKIRA KRGCATHPRS  360
IAERVRRTRI SERMRKLQEL FPNMDKQTNT ADMLDLAVEY IKDLQKQVKT LTDTKAKCSC  420
SSKQKQYSNH SA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	7e-64	bHLH family protein