PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023902488.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 596aa MW: 65217.2 Da PI: 6.4491

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023902488.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.3e-13	350	452	1	48
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC..........................................................TTS-STC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas.......................................................kapskKlsK 40 rr++hn +ErrRRd+iN++++ L l+P+ +++k ++K XP_023902488.1 350 RRESHNLVERRRRDNINERIQDLGGLVPQHRledekvrkhlqtnsplspaianasgmspptasslfangqgrraagsgnitqglpmEEKDKGPNK 444 8****************************655999999999999999999999999999999999999999999999999999996666666999 PP HHHHHHHH CS HLH 41 aeiLekAv 48 +iL v XP_023902488.1 445 GDILNGSV 452 99998766 PP

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence
MLARAITQTS ASPIKLTFTL LATDQLTVFP PFGSISGYSD KNDSVLDLDF APRTTFDHDT 60 MASSPCIKSE PNDYGQFDPN TFMTYGDEHN QNQHHFNSNG NGPGNMNINP ANLSNGSNMS 120 QNFGQNNMSS SFIMGNSGIA DDELIDLELN QSQQPNNNNL NFNQGMHNFY PPQHNNAFSH 180 TPDAPIHSPF SGSNNMTAFR QYGGHSMPQP NGVYRTHMHR LDRTISDSRS PATPNTPAMN 240 HMQVGDDLSR PGMLRIQHQR QSSSVGGAGW ESTPSGHSWN DNSPFPSPNG HPVHVGISEV 300 LKNNNASNNL GDSSAHSHKV VSSLPAKMEG GTAAPIPPPY QSPEAKRRRR RESHNLVERR 360 RRDNINERIQ DLGGLVPQHR LEDEKVRKHL QTNSPLSPAI ANASGMSPPT ASSLFANGQG 420 RRAAGSGNIT QGLPMEEKDK GPNKGDILNG SVAWTRDLMW YTHLKLQQEQ ELKDYVASLG 480 GSWPFQQDDV ERRMHSEICE ILNKHAPLGG FTAYSRAPGS GLRVPGYTNV AGDSVNGEDN 540 HGANGSSDYL QQQQATSPGF QSGGSGMSSG QMHHQTHFWD GGNFKEEDEY GMDDLQ

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence

MLARAITQTS ASPIKLTFTL LATDQLTVFP PFGSISGYSD KNDSVLDLDF APRTTFDHDT  60
MASSPCIKSE PNDYGQFDPN TFMTYGDEHN QNQHHFNSNG NGPGNMNINP ANLSNGSNMS  120
QNFGQNNMSS SFIMGNSGIA DDELIDLELN QSQQPNNNNL NFNQGMHNFY PPQHNNAFSH  180
TPDAPIHSPF SGSNNMTAFR QYGGHSMPQP NGVYRTHMHR LDRTISDSRS PATPNTPAMN  240
HMQVGDDLSR PGMLRIQHQR QSSSVGGAGW ESTPSGHSWN DNSPFPSPNG HPVHVGISEV  300
LKNNNASNNL GDSSAHSHKV VSSLPAKMEG GTAAPIPPPY QSPEAKRRRR RESHNLVERR  360
RRDNINERIQ DLGGLVPQHR LEDEKVRKHL QTNSPLSPAI ANASGMSPPT ASSLFANGQG  420
RRAAGSGNIT QGLPMEEKDK GPNKGDILNG SVAWTRDLMW YTHLKLQQEQ ELKDYVASLG  480
GSWPFQQDDV ERRMHSEICE ILNKHAPLGG FTAYSRAPGS GLRVPGYTNV AGDSVNGEDN  540
HGANGSSDYL QQQQATSPGF QSGGSGMSSG QMHHQTHFWD GGNFKEEDEY GMDDLQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	346	351	KRRRRR
2	346	362	KRRRRRESHNLVERRRR
3	347	363	KRRRRRESHNLVERRRR
4	348	364	KRRRRRESHNLVERRRR
5	350	362	RRESHNLVERRRR
6	351	363	RRESHNLVERRRR
7	358	363	ERRRRD